K19250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19250

Determination of introduced cDNA(s)

  • J033128I21 - Rice Full-length cDNAs - Original: J033128I21

    full reading [+] show sequence

    Nucleotide sequence: J033128I21 - full reading 
    GCTTCTTCTT ACTTACCCTC CCTTCTGATC CCCTGTTTCC CCTGGTCATG 
    GCGGCGAGAT CTCCGTGTAG GAGTGAGATC GCCGCCTCCT CCTCATGGTG 
    TTTCCTGGTG CGGCGCGCGT GAGAGCTCGG CCCGAGCCCG AGCCCTCTCG 
    CTTTTGCCGT GCCGGATCTG ATTCTGTCCG TGCTAGTGTT AGTGTCACGT 
    TTTGGTGTAG ACAGTAGACT CATGAAACGA GGAGAGGCTT TTTTGTAGGA 
    TGGGTCAACT TTTAGGAACT TGTCCAAAGT TTAACAACTC TCAAGGATGA 
    ACTGGGAATA GTGGCGCTGT TATACATTAG GAGTTGGTCT GCGAGAAATT 
    TGGATGGGAT TAGTTGCGGA TCTTCCATCA GCTAGTGGAG CTTAAAGATA 
    CTGATGTGTT GTCCGTACTG AAATGCACTT CTTTGCCTTG GCAAAACCCC 
    AGTCTCCCCC ATAAATTTAG TTTTGTTTGC TTAGCTTTAC CAAATGCCAT 
    CAGCATACAT GGTGTAAAAT CATATACTTT TGTAACGAAC GAATTGTGTT 
    TATTTGCATT TCAACTAGTG CTTTCTTCCT AATTTATCAG GACTATCGAG 
    ATGGCAACTG CAACTGCTCC GAGATTGTGC TTTCCTAAAC CCGGCGCGGC 
    CATTGCTCCG GCGACCAAGA GCCCTTCCTT CATTGGTTAC GCAAAGCAAA 
    CATTGAACAT GTCAGGCCTA AGGATCTCCA ACAAGTTCAG GGTGTCCGCG 
    ACAGCGGTGC ACAAGGTAAA GCTTATAGGC CCGGACGGTG TCGAGCACGA 
    GTTTGAAGCC CCTGAAGATA CCTACATTCT CGAGGCCGCT GAAACTGCCG 
    GGGTGGAGCT GCCATTCTCA TGCCGTGCTG GATCATGCTC CACATGTGCG 
    GGTAAGATGT CATCGGGAGA AGTTGATCAG TCGGAAGGAT CCTTCCTCGA 
    CGAGAACCAG ATGGGCGAGG GATACGTTCT GACATGCATT TCGTACCCTA 
    AGGCGGATTG CGTCATTCAC ACCCACAAGG AGGAAGAACT CTACTAGGTC 
    GCTCTTTTTA TGCTTCTGTG GGCACATTTG CTGATTTCAA AGTGGACTCG 
    CTGTTCAGTT AGTTTTCGCT ATCCAAAAAA TGGCCATATC TTTGTATTAG 
    TCTTTTGATG GGACCGTGTC ATATGAGTTG TGACAATAAT TGTCGTAGTC 
    CTGTTCAGCA TTTAAAATTG CGTTTGTTCA ATTCACAGCA GGTCCAACTT 
    CCAACGATGA CATGTTATCA GAAGTTGTGT GTAATGGTAT TATTGTGGAT 
    CACTTCCAGT AGGAAAAAAT TGACTTGTCC TTTCTCC

    Gene models with high sequence identity

    1. AT2G27510.1 [+] show detail - ferredoxin 3
      E-value: 3e-38; Score: 156.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ferredoxin [2Fe-2S], plant 1e-51
    HMMPfam Ferredoxin 1.9e-18
    PatternScan 2Fe-2S ferredoxin, iron-sulphur binding site 0
    superfamily Ferredoxin 1e-29
    Gene3D Beta-grasp fold, ferredoxin-type 8e-30
    ProfileScan Ferredoxin 12.811

    See the detailed result >

    AT2G27510.1

    Model type
    Protein coding
    Short Description
    ferredoxin 3
    Computational Description
    ferredoxin 3 (FD3); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1); Has 7538 Blast hits to 7536 proteins in 1339 species: Archae - 137; Bacteria - 5569; Metazoa - 7; Fungi - 12; Plants - 623; Viruses - 5; Other Eukaryotes - 1185 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR