K19251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19251

Determination of introduced cDNA(s)

  • J033116E13 - Rice Full-length cDNAs - Original: J033116E13

    full reading [+] show sequence

    Nucleotide sequence: J033116E13 - full reading 
    GGTTGGCTTC CAGAAGCTTC TAGAAGGTGC CCGAGGCGTC GTCTCGGTCG 
    AGCGCCATGG ATCTGGACCC CGAGGGCCTC TTCCGCGACG ACAGCGACGA 
    GGATGACGAC AACGTCCAGG AGAGGGAGGC CAACAAGGAG ATGGTCGTCT 
    ACCTCATCGA CGCCTCGCCC AAGATGTTCA CCCCTGCGAC CAAGGCAGAT 
    GAAAAGGAGG AGACACATTT TCATACGATA GTGAACTGCA TCACACATGC 
    GCTGAAGACG CAGATTATCG GTAGATCCTA TGATGAAGTC GCTATATGTT 
    TCTTTAACAC GAAAGAAAAG AAGAATTTAC AGGAATTGGC TGGTGTTTAT 
    GTTTATAATG TTACAGAGAG AGAACCACTT GATAGGCCTG ATGCAAGATT 
    GATTAAGGAA TTTTCTTGTA TAGAAGATTC TTTTATGAGT AATATTGGAA 
    GTCGGTACGG AATAACTTCT GGATCTCGAG AGAATACCTT GTACAATGCT 
    CTTTGGGTTG CACAGGCATT GCTGCGTAAA GGATCTGTGA AGACTGTGAG 
    TAAGCGGATT GTTATATTCA CCAACGAAGA TGATCCTTTT GGTGGTCTTA 
    CAGGAGCAGT AAAGACTGAT ATGATAAGGA CAACAATCCA ACGTGCAAGA 
    GATGCACAAG ATCTTGGCCT GTCCATTGAA CTTCTTCCTT TGAGTAGGCC 
    CGATGAGGAG TTCAACATGT CCCTGTTTTA TGCAGATTTA ATTGGTCTGG 
    AGGGAGATGA AATAGTGGAT TATCTGCCAT CTTCTGGTGA AAAGCTGGAG 
    GATATGACTA ATCAGCTGAA AAAACGAATG ATGAAGAAAC GCAAAGTCAA 
    AACTCTTGCA TTTGCAATTA CCAATGATGT TTGCATAGAG GTGAATACAT 
    ATGCGCTAAT CCGTTCAACT ACTCCAGGGG CAATTACATG GCTTGATTCT 
    ATCAGCAACC TGCCATTGAA GGCTGAAAGG TCTTTCATAT GCAATGACAC 
    TGGGGCCCTT ATTCAGGATC CACAAAAGCG CTTCCAGGTG TACAATGAGT 
    AAGTACACAC ATGAGACTGG TGAACCAAAG CGGTGTTATT TTTGTATAAT 
    TTTCTGGGTT GGGTTCTGTG ATCTGCTTCT TGATTGCTTC ATCAAGCGCA 
    GAAGTCTACA GTTATGAGTC ATGGCACGAT CATTGTCTCG TCATTCCGTC 
    ATGTTGTTCC TTTTCCGTTT CAGTTTGATG CTTATATTTG TAATCCAAAA 
    CTACTTTATC ATATATTCAT GCACTTTTTT GCACAGCAAA ATTGTTAAAT 
    TCTCTACTCG TGAATTGTCT GATGTGAAGA GGGTTTCAAG TCATCATCTA 
    CGCCTTTTAG GATTCAAGCC ACTGGACTAC CTTAAAGATT ATCACAACTT 
    AAGACCGTCA ACATTTATTT ACCCCAGTGA TGAGGTAATA ACATTACTTC 
    ATGTACTTCT TAACTTCAAT CTTGAGGCCC TCTTGGCACA GCTCCGGATC 
    CAAGATTTCT TGGAGCTGGG TATTCCGAGC TCCACAAATC CATGGATCTG 
    GATCTGTGAT TACGTTGATA AACATTTGGA TAAATCATCT TGTTCCCATT 
    TAAAATTTTA AATCACTATA ATTTAATACA CAAACTTCAA ATCTACCGTT 
    TGAGTTACAG TTTGAAGTTA TACTAGTACA ATTATCTCCT TCATCTTAAT 
    TTTTTTTTGT CAAACACGCA GGAGAGCTGC GTAGTCTTGA CAATATTTTG 
    TTATCTTGTT CGTTTGTTCC CTAGATTATT GTACTTCTCT AGCTTGAAGC 
    AATAATATAA TAGTTGAAAA CCTTAATCAT TTTATTTGAT GATATTATTT 
    TTCATAATAA AAGATCTATT TGTGTTCGAT ACACATCCCT GCTGCATGCT 
    ACTTCCAAAC TAAACTAAAT CTGTCTGAAC ATATTTAGGA TTGTATTGTG 
    GTGTATGCTT ATTTCTTTCT CAGTCTTTAC TTAAATCTAG GGTGCATGTT 
    AGGTTTACCT CCTTTTGTTT GATGCAGCAA ATATTTGGAA GCACTCGTGT 
    TTTCGTTGCT TTACATAGCT CAATGCGGCG TCTTGGAAGG TTAAGTCGAC 
    TTATTATATT TCTGCCATAA TTTCTTTAAT TTTGAAAGGG TTTAGAAACT 
    GACATAGTTA TAAATGGACA TAATGTATGT CAAGTCATAA AATGTACTGT 
    GGATTAAATT AATTAACATT ACTGCTCATT TTTTGGGATA ATTAGTGAGG 
    GGATGCAATT GAAAGGGGAT GTTAGTTTTG TTGAAATATC ACTCTATGCG 
    ATAGTTATCT CAAATTACAG CTCACTAGTA ATATGCCCGT GCTAAATGCT 
    ACGGTCCAAT TTTATTTGTC TTTAATAATT TTCAAAACGT CATGTTAGCC

    Gene models with high sequence identity

    1. AT1G16970.1 [+] show detail - KU70 homolog
      E-value: 2e-111; Score: 400.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA helicase, ATP-dependent, Ku type 0.0000000005
    HMMPfam Ku70/Ku80, N-terminal alpha/beta 2.7e-50
    HMMPanther KU P70 DNA HELICASE 1.2e-29
    HMMPanther KU AUTOANTIGEN DNA HELICASE 1.2e-29
    HMMPanther KU P70 DNA HELICASE 0.00000000011
    HMMPanther KU AUTOANTIGEN DNA HELICASE 0.00000000011
    superfamily Spen Paralogue and Orthologue SPOC, C-terminal-like 0.0000000011
    superfamily vWA-like 1.4e-56
    superfamily Spen Paralogue and Orthologue SPOC, C-terminal-like 0.00000024
    Gene3D no description 0.0000000058
    Gene3D no description 3.1e-61

    See the detailed result >

    AT1G16970.1

    Model type
    Protein coding
    Short Description
    KU70 homolog
    Curator Summary
    Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.
    Computational Description
    KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR