K19308

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19308

Determination of introduced cDNA(s)

  • J023122N01 - Rice Full-length cDNAs - Original: J023122N01

    full reading [+] show sequence

    Nucleotide sequence: J023122N01 - full reading 
    GACCTAATAC TGCCGACGCC ACGTATTCCT ACCCCCTCCC CCTTCCCAAT 
    CTGTTTCCAA TCGGATGAGA CCCCGCCGGC GCCGCCTCCT CCCGCTATCC 
    GCCGCGCCGC TCTTCGCCGG CGCCCTCCGC CTCATCGCGC TTTCCTTCAC 
    ACTGCGCTAC CTCGACCAGA TCCTCGCCGT GTCCCTCGCC TCCGTACACT 
    ACCCTCTCGA CCCCCGCCCC GGAAACCTCA GCTCCCTCCT CCTCCGACCT 
    CCGCTACGCG TCCCTCCCTC CCACCCACCT CCTCCGCCGC CCCGATCGCT 
    TTCTCCGCTG CCGCCTTCTC TTCCGCTTGC CTCGACTACT TCTCCTTCGC 
    CTTCGCCGCC ACCTCGCTCA TTGCTCTCAT GGCGGCGGCG TGTCGTCTCC 
    AACCGACTCC GCAGCCCGCG CGCGGCGCGC TGCACGCGCG GGTTACGCCG 
    CCGACACGTT CGTGGCGTCC GCATTGGCCA AGCTGTAGCC TGTACGCTTC 
    ATGCTGTCCA GAGGTGACCA CGCACGCAAG GTGTTCGACA CTGTGCAGTC 
    GCCGGATACC GTTATGTGGA ACACGCTGAT GGCCGGCCGG GCTTCCTGGT 
    TCGGAGGCCC TGGAGTCGTT CGTGAGGATG GCGAGTGCAG AGTCTGTTCG 
    GTCTGACACA ACCACGCTGG CAACGGTCTT ACCAGCAACA GATATAACAA 
    TGGGGAATTG GGGAGGATGC CTCTTGCAGA GAAGAGAGGG TTGGCGGAGT 
    ATGAGCATGT TCTGAAGAGA GGGTTGGCGG AGTATGAGCA TGTTCTGACC 
    GGTTGATCTC GGTGTATACA GCGGGGATGT GGAATTCTGC ATGGCGTCTC 
    TTTGACTTGA TGGAGAATCC AGATTTGGTT GCCTACAATG CTTAATCTAT 
    GTTTGCTCGG CGAATTGCAT GGTTGGTTCA TCAGTTAATC TGTTTATTGG 
    GTTGATGGCC TTGGAATTGA AGCCAAACTC GAGCACTGGC ACTGATCCCG 
    TATAGTCTGT TTGGGAATGA ACTGCTTGAT CAATGCTTAC ATGGTCCTCT 
    CAAGTCTGGA TTTACTGCGA ATTCTCCAGT GTCGACAGCA ATTACCATAT 
    TGTACTGTAG GTTAAATGAT ATGGAGTCTG CAAGGAAGGC CTTCAATGCG 
    ATGCCATAGA AGACCACGGA ATCGGAATCA TGGAAAGCAA TAATACCAGG 
    GTATGCCTAG AATGGCTGGA CGGAGATGGC AATTGCCCTC TTTGAGCAAA 
    TGCTGGTACT TAGCGTGTGA CCAAATCCAA TCATCATTTC TAGCTCTCTT 
    TCAGCGTGTG CACAGCTTGG AGCTTTGTCC CTGGGAAAGT GGCTGCATAG 
    GATTATCGCT GAGGAGGACT TGGGGCCCAA TGTTTATGTC ATGACAGTGC 
    TCATTGACAT GTATGCATAG TGTGGAAGCA TTTCCGAAGC TCGGAGCATC 
    TTCACTTCAA CAGTATGGAT AGCAAGAATG TGGTCTCATG GAATGCAATT 
    AGCTGGATAT GGCCTTCATG GGCCAAGGTG CTGAGGCTTT GAAGCTCTAC 
    AAGGACATGC TGGATGCAAA CCTTATTCCA ACAAACGCTA CCTTCCTGTT 
    GGTACTCTAT GCATGCAGCC ACATAAGGTT GGCTGAGGAA GGGCGCAAAG 
    TCTTCCAGTC AATGACCGAT CATTTTGCAA TAATTCCAAG TATTGAGCAT 
    GCACATGCAT GATGGACCTC CTTGGCTGAG CTGGCCAGCT CAAGGAGGTT 
    TTTAAGCTCA TTTCTGAATT CCCCAAGACC GCTGTTGGAC CTGGCTTAAT 
    ATTGCTTGGT GCTTGCATGG TCCATAAGGA TAGCGATCTT GCACAAATTG 
    CACCCCCAGA AAACAGCGGC TACTATGTTC TGCTCTCTAA TTTACTTGTA 
    GTCAAGAAGC AAATCTCTGA AGCAGCGGCA AAAGGCAGGA AGCTGGTTAA 
    ACTAATCGAG ATAGTTGACA AGCCAAACTT CCTCATGGCC GGCGACTGTG 
    CCCATCCACA GTGTGAGGCC ATACTTGGAA AATCTTAACT TCAAAGACGA 
    TTTGACGCTA GGTATCGACC TGAGACAGAG CTAGCATTGT ACGATGTTGA 
    GGAGGAAGAG AAGGAGCATA TGTTTGAAAG TGCACAGTGA AAAGCTGGCA 
    ATTGCCTTCG GATTTCTCAG CACAGAACCG AGATCTGAAA TCAGGATAAT 
    CAAGAATCTT AGGGTGTGCC TGGAGTGCCA CAACGCCACC CAAGTTCATA 
    TCCAAGGTGA CACAGAGACT GATTCTGGTT AGGGAATAGG GATGCTTCAC 
    GGTTTTCATC ATTTCAGAGA TGAGTTTGCT CCTCTGGAGA GATTACTGGT 
    GTGATTCACC TGAAATGCCT CGGGTGTCTA AGCATATGGT GATTCAGGCC 
    TCCACTGCCG CATTGCCGCG ATGGCTTCGT CCCCCATCTC TCCCTAGAAA 
    ACTATTTAAA AAAATAAAAA TTGTAGATAA TTTTAGAAAA TGTAGAGGAA 
    AATCAGAAAA ATGTAAAAGA ATATGAATCA TGTAGAAAGT TTTGGCATGA 
    TATTTGCTAT ATTATGGACA TTGAACAAAG TAGAAATCCA TTTCCCCCTC 
    AAGCG

    Gene models with high sequence identity

    1. AT4G30700.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 2e-76; Score: 25.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 6e-09
    FPrintScan PRICHEXTENSN 6e-09
    FPrintScan PRICHEXTENSN 6e-09
    FPrintScan PRICHEXTENSN 6e-09
    FPrintScan PRICHEXTENSN 6e-09
    HMMPanther SELENIUM-BINDING PROTEIN 1.5e-14
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.5e-14
    HMMPanther SELENIUM-BINDING PROTEIN 2.2e-07
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.2e-07
    HMMPanther SELENIUM-BINDING PROTEIN 6.3e-19
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6.3e-19

    See the detailed result >

    AT4G30700.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0; Bacteria - 8; Metazoa - 149; Fungi - 107; Plants - 40176; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR