K19314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19314

Determination of introduced cDNA(s)

  • J033092K22 - Rice Full-length cDNAs - Original: J033092K22

    full reading [+] show sequence

    Nucleotide sequence: J033092K22 - full reading 
    GGTACAGGGT AGTAGATCTT TCGTACGTTG GAGCCGGCCG GATCGACGAC 
    CATGGGGTGC GACGACAAGT GCGGGTGCGC CGTCCCGTGC CCCGGCGGCA 
    CGGGCTGCAG GTGCGCGTCT TCGGCGAGGA GCGGCGGCGG CGACCACACG 
    ACGTGCTCGT GCGGCGACCA CTGCGGGTGC AACCCGTGCA GGTGCGGCCG 
    CGAGTCGCAG CCGACGGGGA GGGAGAACCG GAGGGCCGGC TGCTCCTGCG 
    GCGACTCCTG CACCTGCGCC TCCTGCGGCT CCACCACCAC CACCGCTCCC 
    GCGGCCACCA CCTGATCCAT CCATCCATGC GCCCAAAAAT GCCCAACGAG 
    ACGTGTTTAT ACGTGTGGTT AAGCGTGTGT ACGTGCGCCA TGCTTAGTAC 
    TCATAGCTGC TTAGCTAAAC AGCACAGCTG ATAAAAAGGG CTTGCTGCTT 
    GAGTCGAGTC GTATCCCGTT GTCTAGTTCT GGCTAGACTC GCGCATCACG 
    CATGCAACGG ACATGGTGAT ACGCGAGGGA TGGAGAGTTC GGAGTTGGGA 
    GACACTGTGT ACTGCAGTAC CAGGTTGATA AGTGTGTCTG TACTTGTGTA 
    AATATGTTTT ACATGAATAA AAAGGTTGGT AACTTTGTCA TGTTTC

    Gene models with high sequence identity

    1. AT2G23240.1 [+] show detail - Plant EC metallothionein-like protein, family 15
      E-value: 1e-17; Score: 86.70

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant EC metallothionein-like protein, family 15 1.7e-18
    FPrintScan Plant EC metallothionein-like protein, family 15 1.7e-18
    FPrintScan Plant EC metallothionein-like protein, family 15 1.7e-18
    FPrintScan Plant EC metallothionein-like protein, family 15 1.7e-18
    FPrintScan Plant EC metallothionein-like protein, family 15 1.7e-18
    HMMPfam Plant EC metallothionein-like protein, family 15 2e-25

    See the detailed result >

    AT2G23240.1

    Model type
    Protein coding
    Short Description
    Plant EC metallothionein-like protein, family 15
    Computational Description
    Plant EC metallothionein-like protein, family 15; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: Plant EC metallothionein-like protein, family 15 (TAIR:AT2G42000.2); Has 284 Blast hits to 225 proteins in 80 species: Archae - 0; Bacteria - 6; Metazoa - 54; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR