K19316

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19316

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19316

Determination of introduced cDNA(s)

J033080J11 - Rice Full-length cDNAs - Original: J033080J11

full reading [+] show sequence

GATAGTGAGT CTCGTCGCAG TGAGAGAGAG AGAGGAGTCG AGTAGATAGA 
TAGATAGATC GGCGTGGGAG AAGACGACAT CGCCGGCGAC GAGACCAGAT 
CGATCGCCGA GGTATCGCCT CCCTCCCCGA CCGAGCAGGG TCGCCGCCGT 
TCGTTCCTCT TGCTGCTTCC GCCGCATCCA TCCTGCGGGG ACTAAACCTT 
GAAGCATCTG GGCTGTTGTT TCACCATTGT AGTGGATTCC ACTTCGGAAC 
TGAACTTTTC TAGTTGTTTC CGTGACAATG AAAACTCACG AGAGAGCTGC 
TAATTTGGCC CTTGCAGGTT TGAGCTTGGC ACCCCTTGTG GTTAAAGTAG 
AGCCAAATGT GAACGTCATA TTGACAGCAT GTCTTGCTGT CTATGTGGGC 
TGTTACCGTT CTGTCAAGCC GACTCCACCC TCTGAGACAA TGTCCAAGGA 
GCATGCTATG CGGTTTCCTT TGGTGGGAAG TGCTATGCTT CTCTCTCTGT 
TCCTTCTATT CAAGTTTCTC TCGAAAGACT TGGTCAATGC TGTTCTCACT 
GCCTACTTTT TCATCCTTGG CATTGCCGCT CTCTGTGCAA CATTGCTGCC 
TTCCATAAAA CGATTCCTTC CAAAAGAATG GAATGATAAT GCCATCGTTT 
GGTGTGCTCC ATTTTTCCAC TCGCTCTCAG TGGAGTTTAC CAAGTCTCAA 
GTTGTTGCAT CAATCCCAGG ATTTTTCTTT TGCATATGGT ATGCTGCGAA 
GAAGCATTGG CTAGCAAACA ATGTTTTGGG GATTTCTTTC TGCATTCAGG 
GAATTGAGAT GCTATCACTT GGATCATTCA AAACTGGTGC TATTCTCTTG 
GCTGGCCTCT TTTTCTATGA TATTTTCTGG GTTTTCTTCA CTCCTGTTAT 
GGTCAGTGTT GCAAAATCAT TTGATGCACC GATAAAGCTT CTATTTCCAA 
CAGGAGATGC TGCACGCCCA TTCTCTATGC TTGGGCTTGG TGACATTGTG 
ATACCTGGTA TATTTGTTGC GCTAGCACTG CGGTTTGATG TCTCAAGAGG 
AATTAAGAAC CGCTACTTCA ATAGTGCATT TTTGGGTTAT ACGGTGGGTT 
TGACCGTGAC GATAATTGTG ATGAACTGGT TTCAAGCCGC ACAGCCTGCC 
CTCTTGTACA TTGTTCCTGG TGTGATTGGT TTTGTTGCTG TTCACTGTTT 
ATGGAATGGA GAAGTCAAGC CACTCCTGGA GTACAACGAG TCAAAGGCTG 
AAGAGGAAGA TGCTGTTGAA GAAGATACTG ATAGCAAACA GAACAAAAAG 
GAGGAGTAGC ACTCTAACAG CAGGGCAAGA AAAGGCAGAA ATTTCATGTA 
AGGTCGTCGG CAGCTAAGTA GGCTGGATGA CCTCTCGGAT ACCAGCTCAC 
TTAAGAACTT AGAAATGATT CGCATGATAG AAACCCTTTT TTGATTTAAG 
AATTGTTTGG TCTGGTGATT AGAAGAGAAG AGAGTAGATT CTTAAGAGGC 
CTGCCAATAT GGTCCAGTGG CTTGACTTTA CCCGGTACCC CTTTTGCTTT 
AGTACTGACT TATAATGGTG GTACAAAGGA TTTACCTGAA TTTTTGGTCT 
GGCAAATAGC GGTTTGTG

Gene models with high sequence identity

AT2G03120.1 [+] show detail - signal peptide peptidase
E-value: 3e-141; Score: 499.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMSmart	Peptidase A22, presenilin signal peptide	1.7e-86
HMMPanther	SIGNAL PEPTIDE PEPTIDASE	4.3e-97
HMMPanther	Peptidase A22B, signal peptide peptidase	4.3e-97
HMMPfam	Peptidase A22B, signal peptide peptidase	8.9e-85

See the detailed result >

AT2G03120.1

Model type: Protein coding
Short Description: signal peptide peptidase
Curator Summary: homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant.
Computational Description: signal peptide peptidase (SPP); FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: pollen germination, pollen development; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (TAIR:AT4G33410.1); Has 989 Blast hits to 959 proteins in 196 species: Archae - 4; Bacteria - 0; Metazoa - 468; Fungi - 136; Plants - 243; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link: InterPro Scan - TAIR