K19328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19328

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19328

Determination of introduced cDNA(s)

J033040F22 - Rice Full-length cDNAs - Original: J033040F22

full reading [+] show sequence

GAATTTCCAT CCGCCGATCC CCTCCGATCT CGAATTCTCG ACCTCCCTTC 
CTCCTTCGCC GCCGCCGCCG CCGCTCGTCG CCGGCCACCT CCACCGCCGC 
CATGAACTAC ATCGTCGGAG CGTTCAAGCC GCCCTGCGAC ATCTCCATCG 
CCTTCTCCGA CGCCAGGTCG CGGAAGCAGA TCGCGGTCAA GAATGACAAT 
GGGAGGACGG TGATGGTGCC GGTCTTCCAG AGCCTGGAGA CCATATCCGG 
GGAGGTGTCG GTAGTGCCGG TTCCGGGCAA GAGGATCGAG CACTTGGGTG 
TCAAGATTGA GTTACTGGGT CAGATAGAGC TTTATTTGGA GCGAGGCAAA 
TTCTATGACT TCACTTCATT GGTGCGTGAG CTAGATATTC CTGGTGAAAT 
TTACGAGAAG AAAACATATC CATTCGAGTT TTCCACTGTT GAAATGCCTT 
ATGAATCTTA CAATGGAACA AATGTCAGAT TAAGATATAT TTTGAAGGTT 
ACGATCAGCC GAAACATTAT GGGCATGGGC AGCATTGTGG AGTTCCGTGA 
GTTCTGTGTA AGAAATTACT CTCCTGCCCC CACAATCAAC AACAGTATCA 
AGATGGAAGT TGGAATTGAG GATTGCTTAC ATATTGAGTT CGAATACAGC 
AAAAGCAAGT ACCATCTCAA GGATGTGATT ATTGGGAAGA TCTACTTTCT 
TCTTGTCAGA ATAAAGATAA AAAACATGGA ACTAGAAGTA CGTCGTAGGG 
AATCAACAGG AGCAGGCTCT AGTGCATATG TTGAGACTGA AACTCTTGCA 
AAGTTTGAGT TGATGGATGG TGCTCCTGTC AGAGGAGAAT CCATCCCGGT 
GAGGCTATTC TTGACGCCTT ACGAGCTGAC CCCTTCGTAT CGGAACATAA 
ACAACAAGTT CAGCGTCAAG TACTACCTGA ATCTGGTCCT TGTTGATGAG 
GAAGATAGGA GGTACTTCAA GCAGCAAGAG ATCACCATGT ATCGCCTTCT 
AGAAACCCCC CAGGCTTCCT AGATTCCAAA CTGGAGCAGC AAGATGTTTT 
TCGATTCTCA GGTTTTGTAC AAGCTAGCAT CGAGGTTAGG GCAATGGCGT 
ACTTACATGT ATATAAACTC CAGAAGAGCT CGGCAGTTCA CTAGTGCTGC 
TCTCCAAATC ACATTTCTTT GTTTCTGTAT CTTCTTGTCC TCTGTGTGCT 
TATGGTAGAC CCTTTGATTC ATGTGGAGTA TATGTGCATT ACCTCCCCCT 
GTTTATTTCT GTTTCTTGAA AGTAATCTGT CCGAAGACCT TATGTGTATT 
ATCTCACAAG GATCTTTGTT AATTCACTTG ATTGAAGTTT TGCAGTGATG 
ATTGAAGTTT TGCAGTGATG CATAACATGC TTCATT

Gene models with high sequence identity

AT5G53530.1 [+] show detail - vacuolar protein sorting 26A
E-value: 4e-138; Score: 488.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Vacuolar protein sorting-associated protein 26	2.5e-151
HMMPanther	VACUOLAR PROTEIN SORTING 26 RELATED	2.5e-151
HMMPfam	Vacuolar protein sorting-associated protein 26	7.7e-119

See the detailed result >

AT5G53530.1

Model type: Protein coding
Short Description: vacuolar protein sorting 26A
Curator Summary: Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.
Computational Description: vacuolar protein sorting 26A (VPS26A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26B (TAIR:AT4G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR