K19335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19335

Determination of introduced cDNA(s)

  • J023107A15 - Rice Full-length cDNAs - Original: J023107A15

    full reading [+] show sequence

    Nucleotide sequence: J023107A15 - full reading
    GCTCTTCAAC TGCTACTACT CTCTCTCTCC TCTCGTCTCG TGCTCTTGCC 
    CCCCTCATCT CTCTCTCTCG CTTCCTAGGG TTTCGCGCCC TCGGATCCCG
    CGGCGGCGGC GAGAAGCTTC CACTCGCCTC GGCGGCGGCG CCGGCCAGAA
    AGATGGCTGG CGGTTTTCGA GTACTGCATC TTGTCAGGCC CTTTCTGGCT
    TTCTTGCCAG AAGTACAGAG CGCTGATAGG AAAATACCAT TCAGAGAAAA
    AGTGATCTAT ACCGTTATCT CTCTCTTCAT TTTCCTGGTG TGCAGTCAGC
    TACCACTCTA TGGAATTCAC TCAACTACTG GAGCAGATCC TTTCTACTGG
    ATGCGTGTTA TTCTTGCTTC AAACCGTGGT ACTGTTATGG AGCTGGGTAT
    TACCCCAATT GTGACATCTG GAATGGTAAT GCAACTTCTA GTGGGATCAA
    AGATTATTGA AGTTGACAAC AGTGTGAGAG AGGACCGTGC ACTTCTGAAT
    GGCGCACAAA AATTGCTGGG CATCTTGATT GCTATTGGGG AAGCTGTGGC
    ATATGTGCTG TCTGGAATGT ATGGCAGTGT AAGCCAACTT GGAACTGGGA
    ATGCCATTCT CATCATCCTC CAGCTTTTCT TTGCTGGCAT CATTGTCATC
    TGTCTTGATG AACTTCTCCA GAAAGGCTAT GGTTTGGGTT CTGGCATTTC
    ATTGTTTATT GCTACCAATA TCTGTGAGAA TATCATCTGG AAGGCGTTTA
    GCCCCACAAC CATCAACAGT GGGCGTGGTG CTGAATTTGA AGGAGCTGTC
    ATTGCATTGT TCCATTTGTT GATTACTAGA ACTGACAAAG TCCGTGCCTT
    GCGTGAAGCT TTCTACCGTC AGAACCTTCC GAATGTGACA AATTTACTTG
    CAACTGTATT GGTCTTCCTC ATAGTCATCT ACTTCCAAGG CTTCCGTGTT
    GTGCTTCCAG TGAGATCAAA GAATGCTAGG GGGCAGCAAG GCTCATATCC
    AATTAAGTTG TTCTACACTT CAAACATGCC CATCATTCTG CACTCTGCAC
    TGATTACCAA CCTCTACTTC ATATCACAGC TTCTCTACAG GAGGTACAGT
    GGAAATTTTC TGGTTAACCT TCTTGGGAAA TGGAAGGAAT CTGAGTACTC
    TGGCCATTCG GTTCCTGTTG GTGGTCTCGC TTACTATGTA ACTGCTCCAT
    CAAGTTTGGC TGATGTTCTT GCGAATCCGT TCCATGCGCT GTTCTATGTG
    GTATTCATGC TGTCAGCTTG TGCTCTCTTC TCAAAGACAT GGATTGAAGT
    ATCTGGCTCA TCTGCAAAGG ATGTTGCTAA ACAGTTGAAG GAACAACAAA
    TGGTGATGCC TGGCCATCGT GAGTCAAACT TGCAGAAGGA ATTGAACAGA
    TACATCCCCA CTGCTGCTGC ATTTGGTGGA GTGTGCATTG GTGCATTGAC
    TGTTCTAGCT GATTTCATGG GTGCGATTGG TTCAGGAACT GGTATTCTGC
    TTGCTGTTAC CATCATTTAC CAGTACTTCG AGACATTCGA GAAAGAGAGG
    GCAACCGAGC TTGGTTTCTT TGGTTTTTGA TACCGTTGCT TGAGGACATT
    GTTATACCAA TAGTTGGATC TTCTTTCAAA TGAAAGTACT TCTTGGCCGG
    CTGTTTATGG ATGTAATTGG AGAGCTTAAA GTCAGTTTAG GTTGCCCGAC
    TTATTTGAAA ATGAGGTACT CGTTTAAGGT TCTGCGTGTG ATTTCAGGCC
    TGTATGGTGG TATATGCCCT GTTTCAAGTA CAGCCATGGC CATCATCGAT
    CCGTCTTCCG CAGCCTTCTG TTTTTCGACT ATGTAGTAAC CATAATTTGG
    GATCAGTTTT AGTCATTTGG AACTGAATAT ATTATCCCTT TTTTTTGCGA
    CAATCATCTC TACTAATCCC TCTTTCTGAT TCCTAGAAAT TATGGAGTAA
    TGCACTAATT CCTCTTTTGT TCTTTGCTTT AGAATTTTGA AATTTGGCAG
    TCTAATATCT TGCATTGTAT TTGTATGTGC GAAGAGCACC ATGTTTTTTT
    TTTTCACAAT GTTAATTGTT ATATTCGTGT TCCCTTGAAT ACATTGTATT
    AACCATTTAA GCTATGGCAA GAGGTTTAAC CC

    Gene models with high sequence identity

    1. AT2G34250.2 [+] show detail - SecY protein transport family protein
      E-value: 0; Score: 871.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SecY protein 1.6e-122
    HMMTigr SecY protein 2e-157
    HMMPIR SecY protein 8.2e-124
    PatternScan SecY protein 0
    HMMPanther PREPROTEIN TRANSLOCASE SECY SUBUNIT (SEC61) 5.1e-278
    HMMPanther SecY protein 5.1e-278
    HMMPfam SecY protein 1.7e-95
    HMMPfam Translocon Sec61/SecY, plug domain 2.2e-19

    See the detailed result >

    AT2G34250.2

    Model type
    Protein coding
    Short Description
    SecY protein transport family protein
    Computational Description
    SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR