K19335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19335

Determination of introduced cDNA(s)

  • J023107A15 - Rice Full-length cDNAs - Original: J023107A15

    full reading [+] show sequence

    Nucleotide sequence: J023107A15 - full reading 
    GCTCTTCAAC TGCTACTACT CTCTCTCTCC TCTCGTCTCG TGCTCTTGCC 
    CCCCTCATCT CTCTCTCTCG CTTCCTAGGG TTTCGCGCCC TCGGATCCCG 
    CGGCGGCGGC GAGAAGCTTC CACTCGCCTC GGCGGCGGCG CCGGCCAGAA 
    AGATGGCTGG CGGTTTTCGA GTACTGCATC TTGTCAGGCC CTTTCTGGCT 
    TTCTTGCCAG AAGTACAGAG CGCTGATAGG AAAATACCAT TCAGAGAAAA 
    AGTGATCTAT ACCGTTATCT CTCTCTTCAT TTTCCTGGTG TGCAGTCAGC 
    TACCACTCTA TGGAATTCAC TCAACTACTG GAGCAGATCC TTTCTACTGG 
    ATGCGTGTTA TTCTTGCTTC AAACCGTGGT ACTGTTATGG AGCTGGGTAT 
    TACCCCAATT GTGACATCTG GAATGGTAAT GCAACTTCTA GTGGGATCAA 
    AGATTATTGA AGTTGACAAC AGTGTGAGAG AGGACCGTGC ACTTCTGAAT 
    GGCGCACAAA AATTGCTGGG CATCTTGATT GCTATTGGGG AAGCTGTGGC 
    ATATGTGCTG TCTGGAATGT ATGGCAGTGT AAGCCAACTT GGAACTGGGA 
    ATGCCATTCT CATCATCCTC CAGCTTTTCT TTGCTGGCAT CATTGTCATC 
    TGTCTTGATG AACTTCTCCA GAAAGGCTAT GGTTTGGGTT CTGGCATTTC 
    ATTGTTTATT GCTACCAATA TCTGTGAGAA TATCATCTGG AAGGCGTTTA 
    GCCCCACAAC CATCAACAGT GGGCGTGGTG CTGAATTTGA AGGAGCTGTC 
    ATTGCATTGT TCCATTTGTT GATTACTAGA ACTGACAAAG TCCGTGCCTT 
    GCGTGAAGCT TTCTACCGTC AGAACCTTCC GAATGTGACA AATTTACTTG 
    CAACTGTATT GGTCTTCCTC ATAGTCATCT ACTTCCAAGG CTTCCGTGTT 
    GTGCTTCCAG TGAGATCAAA GAATGCTAGG GGGCAGCAAG GCTCATATCC 
    AATTAAGTTG TTCTACACTT CAAACATGCC CATCATTCTG CACTCTGCAC 
    TGATTACCAA CCTCTACTTC ATATCACAGC TTCTCTACAG GAGGTACAGT 
    GGAAATTTTC TGGTTAACCT TCTTGGGAAA TGGAAGGAAT CTGAGTACTC 
    TGGCCATTCG GTTCCTGTTG GTGGTCTCGC TTACTATGTA ACTGCTCCAT 
    CAAGTTTGGC TGATGTTCTT GCGAATCCGT TCCATGCGCT GTTCTATGTG 
    GTATTCATGC TGTCAGCTTG TGCTCTCTTC TCAAAGACAT GGATTGAAGT 
    ATCTGGCTCA TCTGCAAAGG ATGTTGCTAA ACAGTTGAAG GAACAACAAA 
    TGGTGATGCC TGGCCATCGT GAGTCAAACT TGCAGAAGGA ATTGAACAGA 
    TACATCCCCA CTGCTGCTGC ATTTGGTGGA GTGTGCATTG GTGCATTGAC 
    TGTTCTAGCT GATTTCATGG GTGCGATTGG TTCAGGAACT GGTATTCTGC 
    TTGCTGTTAC CATCATTTAC CAGTACTTCG AGACATTCGA GAAAGAGAGG 
    GCAACCGAGC TTGGTTTCTT TGGTTTTTGA TACCGTTGCT TGAGGACATT 
    GTTATACCAA TAGTTGGATC TTCTTTCAAA TGAAAGTACT TCTTGGCCGG 
    CTGTTTATGG ATGTAATTGG AGAGCTTAAA GTCAGTTTAG GTTGCCCGAC 
    TTATTTGAAA ATGAGGTACT CGTTTAAGGT TCTGCGTGTG ATTTCAGGCC 
    TGTATGGTGG TATATGCCCT GTTTCAAGTA CAGCCATGGC CATCATCGAT 
    CCGTCTTCCG CAGCCTTCTG TTTTTCGACT ATGTAGTAAC CATAATTTGG 
    GATCAGTTTT AGTCATTTGG AACTGAATAT ATTATCCCTT TTTTTTGCGA 
    CAATCATCTC TACTAATCCC TCTTTCTGAT TCCTAGAAAT TATGGAGTAA 
    TGCACTAATT CCTCTTTTGT TCTTTGCTTT AGAATTTTGA AATTTGGCAG 
    TCTAATATCT TGCATTGTAT TTGTATGTGC GAAGAGCACC ATGTTTTTTT 
    TTTTCACAAT GTTAATTGTT ATATTCGTGT TCCCTTGAAT ACATTGTATT 
    AACCATTTAA GCTATGGCAA GAGGTTTAAC CC

    Gene models with high sequence identity

    1. AT2G34250.2 [+] show detail - SecY protein transport family protein
      E-value: 0; Score: 871.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SecY protein 1.6e-122
    HMMTigr SecY protein 2e-157
    HMMPIR SecY protein 8.2e-124
    PatternScan SecY protein 0
    HMMPanther PREPROTEIN TRANSLOCASE SECY SUBUNIT (SEC61) 5.1e-278
    HMMPanther SecY protein 5.1e-278
    HMMPfam SecY protein 1.7e-95
    HMMPfam Translocon Sec61/SecY, plug domain 2.2e-19

    See the detailed result >

    AT2G34250.2

    Model type
    Protein coding
    Short Description
    SecY protein transport family protein
    Computational Description
    SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR