K19338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19338

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19338

Determination of introduced cDNA(s)

  • J033069E18 - Rice Full-length cDNAs - Original: J033069E18

    full reading [+] show sequence

    Nucleotide sequence: J033069E18 - full reading 
    GCTCTCCCGC AAACAGCACA AAAAGGCAGC AGCTTTGCTC TGCTCGGGTG 
    TTCCGCCGCC ACCGCCGCCG CCGACGAATC ACTCCGGCGG GCTCTTCCCT 
    CCTCCTCGTC GTCGTCCACC GGCGACCGGC GCTTCGTACG ATGTTGAACC 
    TCTTTAAGAT AAAGGGACAG AAGAAGGAAG AGGCGGCAAA TACAAATGGG 
    AGACCTCCTG CTAAGAAGCA AAGTCCAGGA GAATTACGTC TCCATAAAGA 
    CATTGCTGAG CTTAATCTTC CAAAGAAAAC CAACATTACT TTTCCTAATG 
    GAAAGGATGA TCTGATGAAC ATTGAGATTA CTCTTCGGCC TGACGAAGGA 
    TACTATGTGG GTGGAGCTTT TGTTTTCACT TTACAAGTTC CTCCTACTTA 
    CCCTCACGAG CCGCCCAAGG TCAAGTGCAC GACTAAGGTT TATCACCCTA 
    ATATTGACTT GGACGGAAAT GTCTGCCTGA ATATCCTGCG TGAAGACTGG 
    AAGCCTGTCT TGAATATCAA TACCATTGTA TATGGTTTGA ACCTTCTTTT 
    CATTCAACCC AATGACGAGG ATCCCTTGAA CCATGATGCT GCGGCTGTCC 
    TCCGAGATGA CCCACAAAAG TTCCGGAGGA ATGTTCAGAC GGCGATGTCG 
    GGAGGCTATG TCGACAGGGT GCATTTTCCA AGGTGTAAGT AAAGGTGTGT 
    GTTTGCTGGT GCTCTGTGGC TGGCTTCTGC CCACCTTACT CCTGAATACC 
    GTTCTGCAAT CTGAACAATG TGACTTGCCC AAGAAATGAC ATATTTGTGT 
    TACATTTGAG TATGAATGAT GCTTGGTTGA AATGTACTGG AATCATGTAA 
    GCGCAACGAT GTTTAAACTG AAATGTCAAA TGATGTTTGG AACTTGGC

    Gene models with high sequence identity

    1. AT4G36800.2 [+] show detail - RUB1 conjugating enzyme 1
      E-value: 3e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1.5e-40
    HMMPfam Ubiquitin-conjugating enzyme, E2 5.5e-37
    ProfileScan Ubiquitin-conjugating enzyme, E2 29.566
    HMMPanther RUB1 conjugating enzyme Ubc12 6.9e-98
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 6.9e-98
    superfamily Ubiquitin-conjugating enzyme/RWD-like 6e-46
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.6e-36

    See the detailed result >

    AT4G36800.2

    Model type
    Protein coding
    Short Description
    RUB1 conjugating enzyme 1
    Curator Summary
    RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
    Computational Description
    RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR