K19339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19339

Determination of introduced cDNA(s)

  • J023003O13 - Rice Full-length cDNAs - Original: J023003O13

    full reading [+] show sequence

    Nucleotide sequence: J023003O13 - full reading
    GGCTCGGCGT CTCCATCCAC CCTGGTGGTA GTCAAGCACT CAAGCTAGTG 
    TAACGGCGAG TCTACCGCCG CGTTGCCCGA CGCGGCCATG CCGCCGCCGC
    CCGAAGACGA CGGGTCCTCC TCCGCGCGGA CGCCGCTCAT ACCCCCCACA
    CCTCCTCCTC CCGGCCGAGC GGTGGCGCGG CTCCACCCTC TCCCGCTCCT
    CGTTGCGGCG GCCTTCGCCG CATCGTACCA CCTCCTCGTC GCGCCCGCGC
    CGTCGTACTA CCGCTCGCTC TTCCTCTCCC TCGGATCCAA CGACACCGCG
    GCAGCCCACC TCCACGCGCT CACCCTCCGC CCCCACCTCG CGGGCACCGA
    GGCCAACGCC CGCGCCGCCG AGCACGTCGT CTCCGCGCTC TCCTCCCTCT
    CCTTCCCCAC CCGCGTCGTG CCCTACTCCG TCCTCCTCGC CTACCCGGTC
    CACCGCTCCC TCTCCCTCTC GGCGCCAGGC CACGCCACCA CCCCCTTTGC
    GCTGGTGCAG GACACATACC CCGGTGATCC CTATGCCGCG GTCTCCGCGG
    AGGCCGTCCC CACCTTCCTC GCCTACGCCG CGTCCGGCTC GGTCGCCGCC
    GAGGCCGTCT ACGCTAACTA CGGCCGCCCG GAGGATTTCG CCTACCTCGC
    CGCCCGCGGC GTAGACGTCA CCGGGAAGGT CGTCCTCGCG CGCTACGGCA
    AGGTGTACCG CGGCGACATC GTGATAAACG CCCGGAAAGC TGGCGCGGCG
    GCGGCGGTCA TATACACCGA TGCCAAGGAC TACGCGGCGG GGGAGGCCTT
    CCCGGATGGT CCATGGATGC CGCCCACCGG TGTGCAGGTC GGGAGCACGT
    TCAAGGGGGT GGGGGATCCC ACGACGCCGA TGTGGGCGTC GTCCGAAGGG
    TGCGAGCGCG TGAGCATCCC GGAGGCGATG GCCACCGACG ACATGCCGGG
    GATACCGGCG CTGCCTGTGT CGGGAAGTGA TGGGGAGGCT ATACTACAGC
    TTATCGGCGG TGATGTCGCG CCCAAGGATT GGCAAGGCGG AGATGGCTCG
    CCGGTTTACC GGCTCGGGCC CGGGCCGGCG GTGCTCAATC TCACCTACAT
    TGGGAACGAG ACAATGGCTA CTATTCAGAA TGTCATCTCA GTGATCGAAG
    GGAAAGAAGA ACCTGAACGC TATATAATCC TTGGTAATCA TCGTGATGCA
    TGGACTTTTG GGGCAGTTGA TCCGAACAGT GGAACAGCAG CCTTGCTTGA
    GTTAGCTCAA AGGTTCTCTG AGCTACAAAA GAAGGGTTGG AGGCCTCGAC
    GGACCATCAT CTTGTGTAAC TGGGATGCCG AAGAGTATGG ACTGGTTGGA
    TCCACTGAAT GGGTTGAAGA GAACAGGGCT ATGCTAACTT CAAGAACTGT
    TGCTTACCTG AATGTTGATT CTGCAGTGTA TGGTGCAGGG TTTTATGCAT
    CAGCTACTCC TCAACTTGAT GAGTTGCTTA AGGAGGCGAG TAAACAGGTT
    CAAAATCCAG ATAATGAGAC ACAAAGTCTG TATGACTTAT GGATGGCTTC
    TGATAGTTCT TCCATGATTA AGATTGGAAG AATAGGAGGT GGAGGATCAG
    ATTATTCTGC CTTTGTTCAA CACATTGGTA TCCCTTCAAT TGACATTTCT
    ATGGGATCAG AATATGCGGT CTACCATAGC TTGTATGATG ACTTTGTGTG
    GATGGAGAAG TTCGGAGATC CCTTGTTCCG CAGGCACGTC GCAGCGGCAA
    GCATGTGGGG GCTTGTCGCC CTGAGGCTTT CCGATGAGGA GATCCTACCC
    TTCAACTACA GCACTTATGC TGTAGAGCTT GAGAAGGGTG CAATCGATAT
    AAATAAGAGA TTGCTGGGAG TGCCTGTCAG CTCATCTCCC CTGCAAAAGT
    CAATCGCCGA GTTCAAAAGG GCAGCTCTAC AAATGGATTC TGAAATGAAG
    GCCTTACAGA CAAGGAAAGT TTGGAACCCC TGGAGAAACA ATCCCCTGAA
    GGTCAGAGAT CTCAATGAGC GGTTGATGAT GACGGAGCGA GCATTCACCG
    ATCGAGAAGG ACTATCTGGG AGGCCATGGT ACAAACACCT GATTTATGCA
    CCATCACTGC ATGATGATTA CGGAGCGCAG GTGTATCCAG GTGTTGATGA
    TGCCATTCAG ATGGCAGAGA GGACGAATAC GTCCGAATCC TGGCGATCTG
    TGCAGCATGA GATTTACAGG ATTGCTAGGG TCATCAACCA GGCCTCGCTA
    GTCCTAAGTG GAGGGTTAAC ATAAACAACT GTTGGGGAAG CGGTGGAAAT
    GGAACTATGC TTTCTACTCG GGGGACTGGT AATCGTTGAC TGCGATAAAT
    GAAATGTTCA TGTCACTTAT TTGGAACAAA AAAAAGGAAG AAAAATAGAG
    GAATTTGTGG GTTTTAAATC CAAAGAGCGA AGGGTGAAGA GCAAAGCTTT
    GGAAAGTAAA CTGTATCAAA ATAGGACTCG AGGGAATAAA GGGTACATGT
    ACCTTTGATA GCT

    Gene models with high sequence identity

    1. AT5G19740.1 [+] show detail - Peptidase M28 family protein
      E-value: 0; Score: 739.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferrin receptor-like, dimerisation 1.2e-31
    HMMPfam Peptidase M28 3.8e-20
    HMMPfam Protease-associated PA 6.6e-08
    superfamily Zn-dependent exopeptidases 3.9e-87
    superfamily Transferrin receptor ectodomain, apical domai 8.3e-51
    superfamily Transferrin receptor-like, dimerisation 1.7e-32
    HMMPanther GLUTAMATE CARBOXYPEPTIDASE 1.6e-247
    HMMPanther GLUTAMATE CARBOXYPEPTIDASE 1.6e-247
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    Coil coiled-coil 0
    Gene3D no description 2.1e-91

    See the detailed result >

    AT5G19740.1

    Model type
    Protein coding
    Short Description
    Peptidase M28 family protein
    Computational Description
    Peptidase M28 family protein; FUNCTIONS IN: dipeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT3G54720.1); Has 3567 Blast hits to 3525 proteins in 555 species: Archae - 24; Bacteria - 1302; Metazoa - 657; Fungi - 527; Plants - 315; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR