K19339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19339

Determination of introduced cDNA(s)

  • J023003O13 - Rice Full-length cDNAs - Original: J023003O13

    full reading [+] show sequence

    Nucleotide sequence: J023003O13 - full reading 
    GGCTCGGCGT CTCCATCCAC CCTGGTGGTA GTCAAGCACT CAAGCTAGTG 
    TAACGGCGAG TCTACCGCCG CGTTGCCCGA CGCGGCCATG CCGCCGCCGC 
    CCGAAGACGA CGGGTCCTCC TCCGCGCGGA CGCCGCTCAT ACCCCCCACA 
    CCTCCTCCTC CCGGCCGAGC GGTGGCGCGG CTCCACCCTC TCCCGCTCCT 
    CGTTGCGGCG GCCTTCGCCG CATCGTACCA CCTCCTCGTC GCGCCCGCGC 
    CGTCGTACTA CCGCTCGCTC TTCCTCTCCC TCGGATCCAA CGACACCGCG 
    GCAGCCCACC TCCACGCGCT CACCCTCCGC CCCCACCTCG CGGGCACCGA 
    GGCCAACGCC CGCGCCGCCG AGCACGTCGT CTCCGCGCTC TCCTCCCTCT 
    CCTTCCCCAC CCGCGTCGTG CCCTACTCCG TCCTCCTCGC CTACCCGGTC 
    CACCGCTCCC TCTCCCTCTC GGCGCCAGGC CACGCCACCA CCCCCTTTGC 
    GCTGGTGCAG GACACATACC CCGGTGATCC CTATGCCGCG GTCTCCGCGG 
    AGGCCGTCCC CACCTTCCTC GCCTACGCCG CGTCCGGCTC GGTCGCCGCC 
    GAGGCCGTCT ACGCTAACTA CGGCCGCCCG GAGGATTTCG CCTACCTCGC 
    CGCCCGCGGC GTAGACGTCA CCGGGAAGGT CGTCCTCGCG CGCTACGGCA 
    AGGTGTACCG CGGCGACATC GTGATAAACG CCCGGAAAGC TGGCGCGGCG 
    GCGGCGGTCA TATACACCGA TGCCAAGGAC TACGCGGCGG GGGAGGCCTT 
    CCCGGATGGT CCATGGATGC CGCCCACCGG TGTGCAGGTC GGGAGCACGT 
    TCAAGGGGGT GGGGGATCCC ACGACGCCGA TGTGGGCGTC GTCCGAAGGG 
    TGCGAGCGCG TGAGCATCCC GGAGGCGATG GCCACCGACG ACATGCCGGG 
    GATACCGGCG CTGCCTGTGT CGGGAAGTGA TGGGGAGGCT ATACTACAGC 
    TTATCGGCGG TGATGTCGCG CCCAAGGATT GGCAAGGCGG AGATGGCTCG 
    CCGGTTTACC GGCTCGGGCC CGGGCCGGCG GTGCTCAATC TCACCTACAT 
    TGGGAACGAG ACAATGGCTA CTATTCAGAA TGTCATCTCA GTGATCGAAG 
    GGAAAGAAGA ACCTGAACGC TATATAATCC TTGGTAATCA TCGTGATGCA 
    TGGACTTTTG GGGCAGTTGA TCCGAACAGT GGAACAGCAG CCTTGCTTGA 
    GTTAGCTCAA AGGTTCTCTG AGCTACAAAA GAAGGGTTGG AGGCCTCGAC 
    GGACCATCAT CTTGTGTAAC TGGGATGCCG AAGAGTATGG ACTGGTTGGA 
    TCCACTGAAT GGGTTGAAGA GAACAGGGCT ATGCTAACTT CAAGAACTGT 
    TGCTTACCTG AATGTTGATT CTGCAGTGTA TGGTGCAGGG TTTTATGCAT 
    CAGCTACTCC TCAACTTGAT GAGTTGCTTA AGGAGGCGAG TAAACAGGTT 
    CAAAATCCAG ATAATGAGAC ACAAAGTCTG TATGACTTAT GGATGGCTTC 
    TGATAGTTCT TCCATGATTA AGATTGGAAG AATAGGAGGT GGAGGATCAG 
    ATTATTCTGC CTTTGTTCAA CACATTGGTA TCCCTTCAAT TGACATTTCT 
    ATGGGATCAG AATATGCGGT CTACCATAGC TTGTATGATG ACTTTGTGTG 
    GATGGAGAAG TTCGGAGATC CCTTGTTCCG CAGGCACGTC GCAGCGGCAA 
    GCATGTGGGG GCTTGTCGCC CTGAGGCTTT CCGATGAGGA GATCCTACCC 
    TTCAACTACA GCACTTATGC TGTAGAGCTT GAGAAGGGTG CAATCGATAT 
    AAATAAGAGA TTGCTGGGAG TGCCTGTCAG CTCATCTCCC CTGCAAAAGT 
    CAATCGCCGA GTTCAAAAGG GCAGCTCTAC AAATGGATTC TGAAATGAAG 
    GCCTTACAGA CAAGGAAAGT TTGGAACCCC TGGAGAAACA ATCCCCTGAA 
    GGTCAGAGAT CTCAATGAGC GGTTGATGAT GACGGAGCGA GCATTCACCG 
    ATCGAGAAGG ACTATCTGGG AGGCCATGGT ACAAACACCT GATTTATGCA 
    CCATCACTGC ATGATGATTA CGGAGCGCAG GTGTATCCAG GTGTTGATGA 
    TGCCATTCAG ATGGCAGAGA GGACGAATAC GTCCGAATCC TGGCGATCTG 
    TGCAGCATGA GATTTACAGG ATTGCTAGGG TCATCAACCA GGCCTCGCTA 
    GTCCTAAGTG GAGGGTTAAC ATAAACAACT GTTGGGGAAG CGGTGGAAAT 
    GGAACTATGC TTTCTACTCG GGGGACTGGT AATCGTTGAC TGCGATAAAT 
    GAAATGTTCA TGTCACTTAT TTGGAACAAA AAAAAGGAAG AAAAATAGAG 
    GAATTTGTGG GTTTTAAATC CAAAGAGCGA AGGGTGAAGA GCAAAGCTTT 
    GGAAAGTAAA CTGTATCAAA ATAGGACTCG AGGGAATAAA GGGTACATGT 
    ACCTTTGATA GCT

    Gene models with high sequence identity

    1. AT5G19740.1 [+] show detail - Peptidase M28 family protein
      E-value: 0; Score: 739.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferrin receptor-like, dimerisation 1.2e-31
    HMMPfam Peptidase M28 3.8e-20
    HMMPfam Protease-associated PA 6.6e-08
    superfamily Zn-dependent exopeptidases 3.9e-87
    superfamily Transferrin receptor ectodomain, apical domai 8.3e-51
    superfamily Transferrin receptor-like, dimerisation 1.7e-32
    HMMPanther GLUTAMATE CARBOXYPEPTIDASE 1.6e-247
    HMMPanther GLUTAMATE CARBOXYPEPTIDASE 1.6e-247
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    FPrintScan PRICHEXTENSN 5.1e-10
    Coil coiled-coil 0
    Gene3D no description 2.1e-91

    See the detailed result >

    AT5G19740.1

    Model type
    Protein coding
    Short Description
    Peptidase M28 family protein
    Computational Description
    Peptidase M28 family protein; FUNCTIONS IN: dipeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT3G54720.1); Has 3567 Blast hits to 3525 proteins in 555 species: Archae - 24; Bacteria - 1302; Metazoa - 657; Fungi - 527; Plants - 315; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR