K19345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19345

Determination of introduced cDNA(s)

  • J033076L24 - Rice Full-length cDNAs - Original: J033076L24

    full reading [+] show sequence

    Nucleotide sequence: J033076L24 - full reading 
    GGCTCCGCCG TCGCTGTTGC TCTCTGATCC CTAGGGTTTA CTTTCCCCTC 
    CTCCTCGAAC TCTAGGGTTT TTCCGCTCGC TCTCCGCCAC CATGACGGCC 
    GCCGAGACGC AGGAGGAGCT GCTCCGCAAG CACCTCGAGG AGCAAAAGAT 
    CGAGGGAGAT GAGCCTATCC TTGAGGATGA CGATGATGAC GAGGATGATG 
    ATGATGACGA GGATGACAAA GATGATGATG TAGAAGGAGC AGGAGGTGAT 
    GCTAGTGGAA GGTCTAAGCA GAGTAGGAGC GAGAAAAAGA GCAGGAAAGC 
    CATGCAGAAA CTTGGCATGA AGACCATCAC TGGTGTGAGC CGTGTCACTA 
    TCAAAAAGAG CAAGAACATT CTGTTCGTCA TCTCTAAACC AGATGTCTTC 
    AAGAGCCCAA ACTCAGACAC CTACGTCATC TTCGGTGAGG CGAAGATCGA 
    GGATCTGAGC TCGCAGCTGC AGACTCAAGC TGCAGAGCAG TTCAAGGCAC 
    CTGACCTGAG TAACGTCATC TCAAAGGCCG AGCCTTCTGC AGCAGCTCAG 
    GATGACGAGG GGGTCGATGA GTCTGGCGTC GAGCCGAAGG ACATTGAACT 
    GGTGATGACA CAGGCCACCG TGTCGAGATC GAGGGCGGTG AAGGCGCTGA 
    AGGCTGCTAA CGGTGACATT GTCACTGCCA TCATGGAGCT GACGAACTAG 
    TGGAATCACG AAACGTTGTG GTGGGGATGG AACTTGTGGG TTAAATTTTA 
    ATGTTGAGGG CGCATTGATA GGATGAACCC TCCTCCTTGG TTATGCTATC 
    TTGAGAGCGG TAGGTAGTGT TACGAAACTT CAAGGCCTAT ATCATCCTTT 
    GATAAGATCG ACTGTTTGCT ATTTAATATG CCTTTTTCAT TCACTGGTCT 
    CGCTACACAT GCCTGCATGC TCCATGGCTT CTATTATCGA AAAACTGTTG 
    AATGTGAATG AGTATGTTTT TTTGCT

    Gene models with high sequence identity

    1. AT3G12390.1 [+] show detail - Nascent polypeptide-associated complex (NAC), alpha subunit family protein
      E-value: 1e-55; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Nascent polypeptide-associated complex NAC 18.128
    Coil coiled-coil 0
    HMMPfam Nascent polypeptide-associated complex NAC 3.6e-25
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 1e-05
    HMMPIR Nascent polypeptide-associated complex, alpha subunit 3e-80

    See the detailed result >

    AT3G12390.1

    Model type
    Protein coding
    Short Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    Computational Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR