K19346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19346

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19346

Determination of introduced cDNA(s)

  • J013105J01 - Rice Full-length cDNAs - Original: J013105J01

    full reading [+] show sequence

    Nucleotide sequence: J013105J01 - full reading
    GGGAAAAACA GCTTCTTCTC CCCTCTAACC CAAAAAGGCT GAACCTCCAC 
    CTTCACCGCC TCCGCCTCTT TGACCTCCTC CTCCGCCATT GCCGACCACC
    CCAAGCTCTC CCCCCTACAG GAGCCAAGAG AAGGGGCACC GTGCCGTTTC
    TTGGACGGCG GCGGCGATGG ACGGCGGCAG GGTCGGGGGC GACTACATTT
    CCAGCCTCCT CAGCTCCTCC CCCCGGCTCG ACTTCGGCGT GCCGGTGCTG
    GACGCCATCG TGGCGCCGGG AGGCGGCGGC GGCGGCGGCG ACTGCAGCCT
    CGACAAGCTC TGCGGCGACC CGGGGTTCGC GGAGCGCGCC GCGCGGCTGT
    CCAGCTTCAA CAACGGCGGC GGCGGTGTTG GGCAGCGGTA CGGCGGCGCG
    GGGGCGGGGC TCTTCGGGAT GCCTCCTCCG GCTCCCGGCG ACTTCGCCGG
    AGGTGGCTCC AGGGAGGCGT CCTCCGTGTC CGACCCCGCC TCCTCGGCGA
    TGAAGGACGC CGCCGCCAAT GCCAAGAAGA GGAAGTCCAC GGCGGCGGCG
    GCCGCCGCCG CCAAGGGCAA AGGCAAGGAG CCTCCGGTTG GGGAAGAGAA
    GGAATCAGAT GGCAAGAGGT GCAAGACGGG CAATGGCGAG AAGGAGAGCT
    CGGTGAAGCC GAAGGCGGAG CAGGCCGGGA GCGACAGCTC CGTCGAGACG
    GCGGCGGTGG CGGGCAGAAG CAAGGGAAGG GGAAGAATGC CAAGCCGGTG
    GAGCCACCCA AGGACTATGT CCATGTCCGG GCGAGGCGAG GCCAAGCCAC
    TGACAGCCAC AGCCTCGCTG AGAGGGTCAG AAGAGAGAGG ATCAGCCAGA
    GGATGAAGGT TCTCCAGGAC CTGGTTCCAG GATGCAACAA GGTAATTGGC
    AAGGCACTCA TGCTTGATGA GATCATAAAC TACGTGCAAT CGCTTCAACG
    GCAAGTTGAG TTCCTGTCCA TGAAGCTAGC AACTGTGAAT CCACTTGATT
    TCAGTAACCT GCCTACTCTG CTGCAGAAAG ATATGTTCCA AGCATGCGGC
    CCTTCAGCGA GCTCGGTTTT CTCATTAGAA AGCTCCAATT CTGCTTTTCG
    GTTTGCCGAA CAAGGAGATG TTTTCCAACA GTTTGCTCAA AACAGCATGG
    AAAGCCAGTG CACCCTGAAT CAGTTGGACC TGGCTCTATC TCAGGCTACA
    AATGCTGCAC AGTATGCTTT TCAAGATGGA ACAGCCGGCG CAAACTTGCA
    GCAAAGGAAC TTCTGGGAGG ATGATCTCCA AAGTGTTTTC CATATTGAGA
    ATGGACAGAG CCAGGAGAAT GGGGTTTCAG CACCAAACTT CCATGGTCAG
    CAGCAAGCAG GCCACATGAA AATGGAGTTC TAACCTGCTT AGGCCACACT
    GATCAAGGAA AAGAATGACA ATCTGTACAT AGGGAAGAGA CCCAAGTGCA
    AAACTCCCAT TGGCAAAGCT AGTGAAGCTC TCTGAACTCT TGAAGCTAAC
    AGTCATCATT AGGCTCTTAA GAGAGGATAT TTCTTAATCA TAGTCTGCCT
    GTAGGGCGAT GTGATTCTTT TGGTACCTAC TATTTGAGAT GATTATATTT
    TGATATAACC GTAACAAATT AAAATAGTTA ATTTGTGTAT AAAGATATGG
    TGCAGATATT ACAAAGCACC CTCTTCTTCT TCTTTCTGAT TATGTATGAG
    CTGGCCAATT AGCAGCTAGC TGGATGGATG GAACCATGTA TTACCACTGT
    TGCATTTTGT CTATGATGAT AGTTATCCTC ACCTTATC

    Gene models with high sequence identity

    1. AT5G48560.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 4e-43; Score: 173.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helix-loop-helix DNA-binding domain 11.961
    Gene3D Helix-loop-helix DNA-binding 0.0000015
    HMMSmart Helix-loop-helix DNA-binding domain 0.0000000009
    superfamily Helix-loop-helix DNA-binding 0.0000000000000044
    HMMPfam Helix-loop-helix DNA-binding domain 0.00000093
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 0.000002
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 0.000002

    See the detailed result >

    AT5G48560.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR