K19406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19406

Determination of introduced cDNA(s)

  • J013101A22 - Rice Full-length cDNAs - Original: J013101A22

    full reading [+] show sequence

    Nucleotide sequence: J013101A22 - full reading 
    GGGGGTTCGA TTCGAGTCTT CTCTCTCGCA GCAGCACAAA GATGGACGCA 
    AACAGACGCC AAAGTGGAAT CCAGCAATTG TTGGCTGCAG AGCAAGAGGC 
    TCAGCAAATA GTAAATGCTG CTAGGGCTGC AAAATCGGCA AGGCTTAGGC 
    AAGCAAAAGA GGAGGCTGAG AGGGAAATAG CTGAATACCG TGCCCAGATG 
    GAGGCTGAAT TTCAGAGGAA GGTTGCAGAG AGTAGCGGTG ACTCTGGTGC 
    AAATGTCAAG CGTCTTGAGC AGGAGACAGC GGAAAAAATC GCACAACTCA 
    AGCAGCAGGC TGCAAGTATC TCCCCTGAAG TGATTCAGAT GCTTCTGAGG 
    CATGTCACCA CTGTGAAGAA CTAAGGGTTG ATGGCTTGCT GCTAGGCGAT 
    TTGCCATACA TCTGATGGCA AACTTGTACT GTTTATTTTT TGAGAGGGTG 
    GTAAGAATAA CTTCGTCTCT TCTAGCTGTA ATTCCGTGTT CCGAATAACG 
    GAATAAACTG CTTCTGTTCA TCAGCAGCCA TGTTTCGTAC TTTGAAAACC 
    TCGGTTCCTG TCTGGTAAAT ATTATCCTTT CATGTATCAT TTGAATAAAA 
    TAATGGGAGA TTCTTTTTGT TT

    Gene models with high sequence identity

    1. AT3G01390.2 [+] show detail - vacuolar membrane ATPase 10
      E-value: 3e-22; Score: 101.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Vacuolar (H+)-ATPase G subunit 3.2e-35
    HMMTigr Vacuolar (H+)-ATPase G subunit 5.5e-17
    HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT G PLANT 1.9e-52
    HMMPanther Vacuolar (H+)-ATPase G subunit 1.9e-52
    Coil coiled-coil 0

    See the detailed result >

    AT3G01390.2

    Model type
    Protein coding
    Short Description
    vacuolar membrane ATPase 10
    Curator Summary
    Subunit G of the vacuolar membrane ATPAse complex
    Computational Description
    vacuolar membrane ATPase 10 (VMA10); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: plasma membrane, proton-transporting two-sector ATPase complex, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit G2 (TAIR:AT4G23710.1); Has 621 Blast hits to 619 proteins in 206 species: Archae - 2; Bacteria - 17; Metazoa - 288; Fungi - 124; Plants - 126; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR