K19413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19413

Determination of introduced cDNA(s)

  • J013002F11 - Rice Full-length cDNAs - Original: J013002F11

    full reading [+] show sequence

    Nucleotide sequence: J013002F11 - full reading 
    GGCTTCTCCT CTTCCATCTC ACAGAGCTTC CAAATTCCAA GAACTGAAGA 
    AAAAACTTTC AAGAACATCT GAAACATGGC ACTGCCCATC AAGCTTCTCC 
    TAGTCTCTGC ATTTCTCTCC CTCCTCCTCC TGATCCAAGG TAGGATACAT 
    CTTTCTTGCC GGTTCTTGGT GTTCTCTGAT CAAAGACACC ATGCATCCAT 
    CTTTGTTTCT GACTGGCTGT GGAATTAGGC GCGGCGGCGA GGTCGTCGCC 
    GGCGGCGGGG AAGTGCGCGG CGGCGAGCGT GGAGGTGGAG CAGGCGAACA 
    CCGGCGAGAA GGCGGGGTAC GACCCGGTGT TCGAGGTGAC GGTGCGCAAC 
    CGGTGCGCGT GCGCGGCGCG CGGCGTGCGC CTCCGCTCCG AGGGGTTCGC 
    GAGCTCCGTC GCCGTCGACC CGCGGCTGTT CCGCCTCGAC CGCGACGCCG 
    GCGACTACCT CGTCGGCGAC GGCCGCCGCA TCGAGCCCTC CGCCGCCGTC 
    ACGTTCCGCT ACGCCTGGGA CCGCGCCTTC CGCATGGCGC CGGCCGCCCT 
    GCTCGACGAC TGCTCCTGAA AAACCAACCA TCATCGATCG TCCACTGATT 
    GATTCTCTGA TCGAGATTCA AGAACAACCG GTGATAAATG TGTTTATTAG 
    CAGCGTGTAG TGACAGTGAA TTAAGGAGTA ATTAGTAGTA GTATTTACTT 
    AGTTGAGAGT GTTCTTGGGT ATTTGCTGGC TTGCTGCTAA TGGCATCAAT 
    GGCATGAATG ATCATTGGGC ATTGGCATGT GCTGAAGAAC ACAAATCGGA 
    TTCAGAAAAA AAAAGTGAAA GGTGGATGAG GCTTTTTTGT TTTTAGCTGA 
    GAAGATCAAG TGTCTCAGTT TCAGGTGACG GGAATGTATG GTTTGGTTGG 
    TTGTTTGCTT CCCAGTAAAG GAGCTTAGTG GCTAAGTCTT GGATTAATTT 
    AACCCCTGTG TTCAACTTC

    Gene models with high sequence identity

    1. AT4G32110.1 [+] show detail - Beta-1,3-N-Acetylglucosaminyltransferase family protein
      E-value: 5e-07; Score: 52.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLYCOSYLTRANSFERASE FAMILY 31-RELATED 3.5e-05
    HMMPanther Glycosyl transferase, family 31 3.5e-05

    See the detailed result >

    AT4G32110.1

    Model type
    Protein coding
    Short Description
    Beta-1,3-N-Acetylglucosaminyltransferase family protein
    Computational Description
    Beta-1,3-N-Acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Beta-1,3-N-Acetylglucosaminyltransferase family protein (TAIR:AT4G32105.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR