K19420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19420

Determination of introduced cDNA(s)

  • J023110J02 - Rice Full-length cDNAs - Original: J023110J02

    full reading [+] show sequence

    Nucleotide sequence: J023110J02 - full reading 
    GAGGAGTCAA GTCGCCGACT TTTGGAGTTC TCCTCGCCCC AGCTCGGTAA 
    ATTCCTTCGC TTTTTCTCCG CTGGTTCGGA GATTTCCATG TTCACTTTTG 
    TTTTTTTTTT TAATTAAGGG CTTTGCTTTG ATGGAAGGGT TGGGTACTGG 
    TTCCTTCCCT CCGGATCAAT CTTGCTTCTT GCGCTCACCC AACCTAGTAA 
    TTTTTTCCTC TCCCGATTTG TTTAATGCTA ATCTAGGTGG TTGATGATGC 
    TTGCGAGCCA GGCATTGATT CGGCTTTAAG CTTGCCTGCT TGCTTCGCCG 
    TCTTGTTCTT TGAGTTCTTG GTTTTCATGG ATCCTTGATC CGATTTAGGG 
    GTTGCTGCTG CTAGCCGTGG TTGGTGAGAC GGTTCTTGGA GAAGGGGGAT 
    TTCTTGAGGT GCTTTTCTGG GAGGTGTAAC CAACTAAATT CCTATGCTAC 
    CTTCTGGTTG ATGGCCGTCC CTCCTGTTGA ATCAGAAACA AGAAGTGAAG 
    AAACAGATAA TTTCCCTTTA CTTGCAGACC ACATGGAAAA TACTGGACAT 
    CATGCACATG CAGTTGATAT CCCATGGGAT TCTTCACCAT CGACATCTCG 
    CCGAGATAAT CATAATGGAT TTGATCAATT ACCTCGTATC TTAGAAGGTT 
    CTCCTGGGAC ATCTACTCCA TCTAACTCTC AGAATGGTCC TCTAGCAAGA 
    AGAGATGATA ATCGTGGTCG TCGTCAGCCT AGTCCCTTGA ATTCTGGTTG 
    CTGGATCTCA GTTGAGCTAG TTGTAAATGT TAGCCAGATC ATAGCAGCTA 
    TTTGTGTTCT GTCAGTATCA AGGAATGAGC ATCCACACTC TCCGTTATTT 
    GAGTGGGTCA TTGGTTATAC AGTAGGTTGT ACTGCCACGC TGCCTCATCT 
    TTACTGGCGC TATCTCCATC GCAACCTCCC AACCACTGGG CAAGAGCCAA 
    CAGTTCAGAA TATCCCTCCA AACAACACCC CTGAAGCTAA TTCATATGGA 
    GTAACCGGCA CAAATGGAGT CTCAAGAAAC AATGAGGCAA CAGTAAATCC 
    AAGGTTCCAA GCTTTTGCTG ATCACTTCAA AATGGCTCTG GACTGTTTCT 
    TTGCTGTGTG GTTCGTTGTG GGAAATGTAT GGGTATTTGG TGGACATTCT 
    TCTGCTCACG ACGCGCCCAA CTTGTACAGG TTGTGTATTG CCTTCCTCAC 
    ATTCAGCTGC ATCGGCTATG CTATGCCTTT CATCCTCTGC GCATTGATAT 
    GTTGCTGCCT ACCCTGCATA ATCTCTATCT TGGGATTTCG GGAAGATCTA 
    AACCAAAACA GAGGAGCTAG TGCGGAAACA ATCAATGCCT TGGGAACATG 
    CAAGTTCAAG TCAAAGAAAA CTCGTGATGG AGATGGAAAC GAAGTTGGTG 
    TCGGTGTTGT GGCTGCTGGA ACAAACAAGG AGCGAGTCAT TTCTGCAGAA 
    GATGCTGTCT GCTGCATCTG CTTGGCCAGA TATGTCGATA ACGATGATCT 
    CCGAGAGCTC CCTTGTGCGC ACTTCTTCCA CAAGGATTGT GTGGACAAAT 
    GGCTCAAGAT AAACGCGCTG TGCCCCCTTT GCAAGGCTGA GATAGATGGT 
    GTCTCCACAA GTGCTCCAGC CATTGGCTTT GGGCGTCGCC ACAGCGACAA 
    CAGGGTAGGA AACGACATTG AATCACAACT ATAACTCTCT TCCCACTTCG 
    TTGGCAGCGT GGATCACGCC TTTGATGAGG CCTTCCACAC ATCAACCTGT 
    AAATTATAGA GGTAGACATC AAGATGTAAA GGGTCCTCTT ACGATCCAAC 
    AAAGTTCTTT TCTGAATGAC TACTGCCTCC ACTGTCAGTA TATATTGCTT 
    CCAGCATTTG TTTCTTCTC

    Gene models with high sequence identity

    1. AT1G80400.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-83; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 0.0000022
    ProfileScan Zinc finger, RING-type 12.224
    Gene3D no description 0.0000000000003
    HMMSmart Zinc finger, RING-type 0.0000011
    HMMPanther RING FINGER PROTEIN 38 0.0000000000000013
    HMMPanther RING FINGER PROTEIN 6/12/38 0.0000000000000013
    superfamily RING/U-box 8.3e-16

    See the detailed result >

    AT1G80400.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 10084 Blast hits to 10056 proteins in 295 species: Archae - 0; Bacteria - 8; Metazoa - 2540; Fungi - 826; Plants - 5176; Viruses - 44; Other Eukaryotes - 1490 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR