K19438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K19438

Determination of introduced cDNA(s)

  • J033117I21 - Rice Full-length cDNAs - Original: J033117I21

    full reading [+] show sequence

    Nucleotide sequence: J033117I21 - full reading 
    GGCGCGTTCC TCTTCCTCCT CCGTCGCCGC CATCTCAACC CACCGAGGAC 
    GACTCGCCGC CGCCGCCGCC GCCGCAGCCG CCGGCCATCG CCGCCTCCTT 
    CCGTCCTTCT CACCGGGATC CGGCTCGTAC TCGTCACCAT GGGTAAGGCC 
    TCCAAAGACA AGAGGGACAT CTACTACCGC AAGGCGAAGG AGGAGGGGTG 
    GAGAGCTCGT AGCGCCTTCA AGCTTCTGCA GATCGACCAG GAGTTCAACA 
    TCTTCCACGG AGTGAAGCGT GTTGTTGATC TGTGCGCTGC TCCCGGAAGC 
    TGGAGTCAGG TTTTGAGTCG GAACCTGTAT GTTCCAGCAA AACAATCTCC 
    TGATTGCAAA GAAGGTGACC TTCCTCTTAT TGTTGCCATT GATTTGCAAC 
    CAATGGCTCC GATAGAAGGC GTTATACAAG TTCAAGGGGA CATCACTAAT 
    GCTCGAACAG CAGAAGTGGT TATTAGGCAT TTTGATGGAT GCAAAGCAGA 
    TTTGGTTGTC TGCGATGGTG CTCCTGATGT TACCGGCCTT CATGATATGG 
    ACGAGTTTGT TCAGTCCCAG CTTATACTGG CGGCATTGAC AATTGTGACT 
    CACGTACTTA AAGTTGGTGG GAAATTTGTT GCGAAGATTT TCCGTGGAAA 
    AGATACAAGT CTGTTGTATT GCCAGCTGAA ACTATTCTTC TCACAAGTTA 
    CCTTTGCAAA GCCCAAAAGT AGCCGGAACT CAAGCATCGA GGCGTTTGCA 
    GTTTGTGAGA ATTATTCGCC TCCCGAAGGA TTTAAGGAAA AAGATTTATA 
    TCACCTGCTA GAGAAAGTGG GGACTCCTTC TGGGGCTGAT GATTTAGACT 
    GCAGAAGTGG ATGGTTAGAG GGACCAAACA AGGTCTACAT CCCATTTCTG 
    GCTTGCGGTG ACCTCAGTGG TTACGATTCG GATCGTTCTT ACCCACTAAC 
    AAGCACAGAG GGAGGATCCT ACCAGAGCTT GGATCCAGTC CAGCCTCCAA 
    TTGCTCCACC TTACAAAACC GCACTGGAGA TGAAAAAGGT CGCCAGCCAT 
    GGCATTGGAG CAGATATCAG CAAATTATCC CTCGACTCCT GAACTACACT 
    CTGGATCGCT GTTTGTGTTC TTGTAACTGC CAACCCTGTG GAATTTGCAA 
    ATTGTATGGC ATTGTTGTTC CACAGATTAC ACAAGAGATG AACTGAAACT 
    TCAGCTTCAT GTGGTTGTTA TATCAACCAA AAATGTACTA CCTGTTATTT 
    TTATTTAGAA AAGGCACGAA TTCTTTTTCT GG

    Gene models with high sequence identity

    1. AT5G01230.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 7e-156; Score: 547.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP RRMJ_MF_01547 29.373
    Gene3D no description 2.2e-61
    HMMPanther Ribosomal RNA methyltransferase J 6.2e-160
    HMMPfam Ribosomal RNA methyltransferase RrmJ/FtsJ 1.5e-64
    superfamily S-adenosyl-L-methionine-dependent methyltrans 6.5e-39

    See the detailed result >

    AT5G01230.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 5711 Blast hits to 5669 proteins in 1418 species: Archae - 154; Bacteria - 2315; Metazoa - 596; Fungi - 413; Plants - 124; Viruses - 65; Other Eukaryotes - 2044 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR