K19511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19511

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19511

Determination of introduced cDNA(s)

  • J013092A14 - Rice Full-length cDNAs - Original: J013092A14

    full reading [+] show sequence

    Nucleotide sequence: J013092A14 - full reading 
    GAGTTTCCAC CTTTCCCGCA TCTTCCGCCG TGGGGAAGGG AGCAATCGGC 
    AAGCCAATCC AATCCGGTTG CTTCTCCTCC AATCCAACCT CGTCGGCGGC 
    GGCGGCGACC CGCGCCGCGC AGGCTGTTGA GTTATCACGT ATTTGATTAT 
    GGATCTGCCA TTGATGGCTG CTAAAGCCTA TAAGTACAAA GCAGAACTAC 
    TTGTTAAGGA CTACCTGCTA GCAGATTCGT ATGTTCCATA CGCTTCTGTG 
    CTTGGCGGAA TTCTGATGTG CAAGTTGTCA TATGATTTCA CACGCTTTAT 
    CAGTTCATTC TACTTCAAAG GCTATGGTTC TCTCACAAAG ATGCAAAAGG 
    TTGAATGGAA TAACAGGGGC ATGTCCACCG TCCATGCAAT ATTCATTACA 
    CTTATGTCAG CATACTTAGT CTTCTTCTCG GGTTTATTCT CTGACCAGCA 
    GGATGGACCA GTAACATTTA GAAGTTCGAG CCTCTCCAAT TTCACGCTAG 
    GGGTCTCAGT TGGGTATTTC ATTGCGGACC TTGCCATGAT ACTATGGTTT 
    TACCCTTCAC TCGGTGGAAT GGAGTATCTT GTCCACCATG TATTGTCACT 
    TACTGCTGTA ACGTATACTA TGCTTTCTGG GGAAGGACAG TTATACACAT 
    ACATGAGTCT CATCTCAGAG ACTACTACAC CTGGAATCAA CCTAAGATGG 
    TTCCTTGATG TTGCTGGAAT GAAAAGATCC AAAAGATACG TTGTTAATGG 
    AGTTGCAATG TTTCTTACTT GGCTGGTTGC AAGGATAATT TTGTTCATGT 
    ACTTGTTTTA TCAGATCTTT TTACATTATG ATCAGATTAA GCAGATGGAG 
    ACCTTTGGTT ATCTTCTGGT TTGTGTTGTG CCTGCCATAC TGTTCGTGAT 
    GAATATGATA TGGTTTTCCA AGATCTTAAG GGGCCTCAAG AAGACACTGG 
    CCAAGAGGCA TTGAGTGGGG CAAGGGGTAT GCATGTACAG CCACGACAAA 
    CCACCTATCT GTAAATTCAC TCAGCAGGCC AGCAGCCTAT AGCTTCTCAT 
    TAGTCACGAT GGCTAATCCT GGTAATATCA GCTTGGCCAT TAAGATCCAG 
    ATTTATGATT GAATGCCCAG CTTTTTATGC ATGGATGATA TATTAATTTG 
    TATATATGTT CCGCTATGGC TGTATGTTCT TAATACCCAT CTTCTTTTTC 
    TCGGTATAAA TGATTATATC TTAGTTTTAA CTTAAACAAC TATTTGCCCC 
    AATTTCAGTC ACATTGTCAA CACATTGCTG TAATTTGCCA TCAGCTTTGG 
    CCATCATTCC CAAGAATAGT TTGATCATCA ACTTTTAGTC TCCCTGGACT 
    AAACTGCCTT TCTTTAGATC TGGCTTCACA ATGATGCCCG AGTTTTTAAA 
    ACATGTATAG GCTGAAGAAT TTTGGAATTT GGAATTTGGA ATCAAGAAAG 
    TTTTC

    Gene models with high sequence identity

    1. AT4G19645.2 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 2e-95; Score: 346.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CT120 PROTEIN 4.2e-06
    HMMPfam TRAM/LAG1/CLN8 homology domain 1.9e-36
    ProfileScan TRAM/LAG1/CLN8 homology domain 34.459
    HMMSmart TRAM/LAG1/CLN8 homology domain 1.2e-42

    See the detailed result >

    AT4G19645.2

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR