K19523

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19523

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19523

Determination of introduced cDNA(s)

  • J013002H23 - Rice Full-length cDNAs - Original: J013002H23

    full reading [+] show sequence

    Nucleotide sequence: J013002H23 - full reading 
    GACCAACACG AAGCAAAAGG ACACCAGAAA CATAGTACAC TTGAGCTCAC 
    TCCAAACTCA AACACTCACA CCAATGGCTC TCCAAGTTCA GGCCGCACTC 
    CTGCCCTCTG CTCTCTCTGT CCCCAAGAAG GGTAACTTGA GCGCGGTGGT 
    GAAGGAGCCG GGGTTCCTTA GCGTGAGCCA GAAGGCCAAG AAGCCGTCGC 
    TGGTGGTGAG GGCGGTGGCG ACGCCGGCGG CGCCGGTGGC GAGCCCCGGC 
    GCGGGCACGT CGAAGGCGGA CGGGAAGAAG ACGCTGCGGC AGGGGGTGGT 
    GGTGATCACC GGCGCGTCGT CGGGGCTCGG GCTCGCGGCG GCGAAGGCGC 
    TGGCGGAGAC GGGGAAGTGG CACGTGGTGA TGGCGTGCCG CGACTTCCTG 
    AAGGCGGCGA CGGCGGCGAA GGCGGCGGGG ATGGCGGCGG GGAGCTACAC 
    CGTCATGCAC CTGGACCTCG CCTCCCTCGA CAGCGTCCGC CAGTTCGTGG 
    ACAACTTCCG GCGCTCCGGC ATGCCGCTCG ACGCGCTGGT GTGCAACGCC 
    GCCATCTACC GGCCGACGGC GCGGCAGCCG ACGTTCACCG CCGACGGGTA 
    CGAGATGAGC GTCGGGGTGA ACCACCTGGG CCACTTCCTC CTCGCCCGCC 
    TCATGCTCGA CGACCTCAAG AAATCCGACT ACCCGTCGCG GCGGCTCATC 
    ATCCTCGGCT CCATCACCGG CAACACCAAC ACCCTCGCCG GCAACGTCCC 
    TCCCAAGGCC GGGCTAGGCG ACCTCCGGGG GCTCGCCGGC GGGCTCCGCG 
    GGCAGAACGG GTCGGCGATG ATCGACGGCG CGGAGAGCTT CGACGGCGCC 
    AAGGCGTACA AGGACAGCAA GATCTGTAAC ATGCTGACGA TGCAGGAGTT 
    CCACCGGAGA TTCCACGAGG AGACCGGGAT CACGTTCGCG TCGCTGTACC 
    CGGGGTGCAT CGCGACGACG GGCTTGTTCC GCGAGCACAT CCCGCTGTTC 
    CGGCTGCTGT TCCCGCCGTT CCAGCGGTTC GTGACGAAGG GGTTCGTGTC 
    GGAGGCGGAG TCCGGGAAGC GGCTGGCGCA GGTGGTGGGC GACCCGAGCC 
    TGACCAAGTC CGGCGTGTAC TGGAGCTGGA ACAAGGACTC GGCGTCGTTC 
    GAGAACCAGC TCTCGCAGGA GGCCAGCGAC CCGGAGAAGG CCAGGAAGCT 
    CTGGGACCTC AGCGAGAAGC TCGTCGGCCT CGTCTGAGTT TATTATTTAC 
    CCATTCGTTT CAACTGTTAA TTTCTTCGGG GTTTAGGGGG TTTCAGCTTT 
    CAGTGAGAGA GGCCTGTCAA GTGATGTACA ATTAGTAATT TTTTTTTACC 
    CGACAAATCA TGCAATAAAA CCACAGGCTT ACATT

    Gene models with high sequence identity

    1. AT5G54190.1 [+] show detail - protochlorophyllide oxidoreductase A
      E-value: 1e-127; Score: 453.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTOCHLOROPHYLLIDE REDUCTASE 1.1e-167
    HMMPanther Short-chain dehydrogenase/reductase SDR 1.1e-167
    Gene3D NAD(P)-binding domain 1.4e-39
    FPrintScan Glucose/ribitol dehydrogenase 3.3e-08
    FPrintScan Glucose/ribitol dehydrogenase 3.3e-08
    FPrintScan Glucose/ribitol dehydrogenase 3.3e-08
    HMMTigr Light-dependent protochlorophyllide reductase 1.9e-234
    superfamily NAD(P)-binding domain 4.6e-39
    HMMPfam Short-chain dehydrogenase/reductase SDR 3.7e-19

    See the detailed result >

    AT5G54190.1

    Model type
    Protein coding
    Short Description
    protochlorophyllide oxidoreductase A
    Curator Summary
    light-dependent NADPH:protochlorophyllide oxidoreductase A
    Computational Description
    protochlorophyllide oxidoreductase A (PORA); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase B (TAIR:AT4G27440.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR