K19529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19529

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19529

Determination of introduced cDNA(s)

  • J033112A19 - Rice Full-length cDNAs - Original: J033112A19

    full reading [+] show sequence

    Nucleotide sequence: J033112A19 - full reading
    GGGATTTCCG ATCGCTATAT AAAAGACCTA GGATTTCGAA ATTTTTCCCT 
    CCCCCTCCCC CTTCGCGCGC GCGCTCTCTT CCCGCCCTTT TTTTTTCCTT
    CTTCTTCACC GGTGGGATTG ATTCGTGGGG TGCGGATCTG GTTTTTGGGG
    GTGTGTATGG CGGCGGCGGA GGCGGCGGCG GAGGCGGCGG CGGCGCTGGA
    GGGGAGCGAG CCCGTGGACC TGGTCAAGCA CCCCTCCGGC ATCATCCCCA
    CGCTCCAAAA CATCGTGTCG ACGGTCAATT TGGATTGCAA ATTAGACCTC
    AAAGCTATAG CTTTGCAAGC ACGCAATGCA GAATATAATC CAAAGCGTTT
    TGCTGCAGTT ATCATGAGAA TAAGAGAACC GAAAACTACA GCTCTGATAT
    TTGCATCGGG TAAAATGGTA TGTACTGGGG CAAAGAGCGA ACAACAATCA
    AAGCTTGCAG CAAGAAAGTA TGCTCGTATT ATCCAAAAGC TTGGCTTTGC
    TGCTAAGTTT AAGGACTTCA AGATTCAGAA CATTGTTGGT TCTTGTGATG
    TTAAATTTCC AATCAGGCTG GAGGGACTTG CATATTCTCA TGGTGCTTTC
    TCAAGTTATG AGCCTGAACT CTTTCCTGGT CTGATATATC GGATGAAGCA
    ACCGAAGATT GTTCTTCTGA TTTTTGTTTC AGGCAAGATT GTTTTGACCG
    GAGCAAAGGT GAGGGATGAG ACGTATACCG CCTTTGAGAA CATATACCCT
    GTGCTAACAG AGTTCAGAAA AGTCCAGCAA TGATAACCTA TGGAGGTCAC
    AACTACAACG CTTCCTTGAG GATTTTGCTG CCTTGTAACT GCTAATTTTA
    ATCTGTACAT ATATGTAGTC TGGAGGGGCG TACAGCATCT TGTAATTTAT
    GTGAGCCCCT GGATGAATGA GCACTGTAGA CTTGTAGCTG GGTGAGTATG
    TTGTTAGTAG TCTCTTGTGG CATGGAGTTC AGTCCAACCG ATCTGATGGA
    GTTTTCGTAC GTTTGTAGCC CTTGCCGATC TTTTTCCCTT TTCTTCCCAA
    TAGACATGTT GCTAAACTTT TACTAACTTG TTAACAGACA GACAGAATGA
    TAACATGGAC TGTGGATGCT TAGCGTTTGT GGCCG

    Gene models with high sequence identity

    1. AT1G55520.2 [+] show detail - TATA binding protein 2
      E-value: 7e-100; Score: 360.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    HMMPanther TATA-box binding 3.3e-136
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 8.7e-33
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 1.9e-32
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 5.9e-25
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 2.2e-32
    PatternScan TATA-box binding 0
    PatternScan TATA-box binding 0
    HAMAP TBP_MF_00408 27.99
    HMMPfam TATA-box binding 1.3e-32
    HMMPfam TATA-box binding 2.7e-35

    See the detailed result >

    AT1G55520.2

    Model type
    Protein coding
    Short Description
    TATA binding protein 2
    Curator Summary
    TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
    Computational Description
    TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR