K19529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19529

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19529

Determination of introduced cDNA(s)

  • J033112A19 - Rice Full-length cDNAs - Original: J033112A19

    full reading [+] show sequence

    Nucleotide sequence: J033112A19 - full reading 
    GGGATTTCCG ATCGCTATAT AAAAGACCTA GGATTTCGAA ATTTTTCCCT 
    CCCCCTCCCC CTTCGCGCGC GCGCTCTCTT CCCGCCCTTT TTTTTTCCTT 
    CTTCTTCACC GGTGGGATTG ATTCGTGGGG TGCGGATCTG GTTTTTGGGG 
    GTGTGTATGG CGGCGGCGGA GGCGGCGGCG GAGGCGGCGG CGGCGCTGGA 
    GGGGAGCGAG CCCGTGGACC TGGTCAAGCA CCCCTCCGGC ATCATCCCCA 
    CGCTCCAAAA CATCGTGTCG ACGGTCAATT TGGATTGCAA ATTAGACCTC 
    AAAGCTATAG CTTTGCAAGC ACGCAATGCA GAATATAATC CAAAGCGTTT 
    TGCTGCAGTT ATCATGAGAA TAAGAGAACC GAAAACTACA GCTCTGATAT 
    TTGCATCGGG TAAAATGGTA TGTACTGGGG CAAAGAGCGA ACAACAATCA 
    AAGCTTGCAG CAAGAAAGTA TGCTCGTATT ATCCAAAAGC TTGGCTTTGC 
    TGCTAAGTTT AAGGACTTCA AGATTCAGAA CATTGTTGGT TCTTGTGATG 
    TTAAATTTCC AATCAGGCTG GAGGGACTTG CATATTCTCA TGGTGCTTTC 
    TCAAGTTATG AGCCTGAACT CTTTCCTGGT CTGATATATC GGATGAAGCA 
    ACCGAAGATT GTTCTTCTGA TTTTTGTTTC AGGCAAGATT GTTTTGACCG 
    GAGCAAAGGT GAGGGATGAG ACGTATACCG CCTTTGAGAA CATATACCCT 
    GTGCTAACAG AGTTCAGAAA AGTCCAGCAA TGATAACCTA TGGAGGTCAC 
    AACTACAACG CTTCCTTGAG GATTTTGCTG CCTTGTAACT GCTAATTTTA 
    ATCTGTACAT ATATGTAGTC TGGAGGGGCG TACAGCATCT TGTAATTTAT 
    GTGAGCCCCT GGATGAATGA GCACTGTAGA CTTGTAGCTG GGTGAGTATG 
    TTGTTAGTAG TCTCTTGTGG CATGGAGTTC AGTCCAACCG ATCTGATGGA 
    GTTTTCGTAC GTTTGTAGCC CTTGCCGATC TTTTTCCCTT TTCTTCCCAA 
    TAGACATGTT GCTAAACTTT TACTAACTTG TTAACAGACA GACAGAATGA 
    TAACATGGAC TGTGGATGCT TAGCGTTTGT GGCCG

    Gene models with high sequence identity

    1. AT1G55520.2 [+] show detail - TATA binding protein 2
      E-value: 7e-100; Score: 360.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    FPrintScan TATA-box binding 2.2e-68
    HMMPanther TATA-box binding 3.3e-136
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 8.7e-33
    superfamily Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal 1.9e-32
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 5.9e-25
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 2.2e-32
    PatternScan TATA-box binding 0
    PatternScan TATA-box binding 0
    HAMAP TBP_MF_00408 27.99
    HMMPfam TATA-box binding 1.3e-32
    HMMPfam TATA-box binding 2.7e-35

    See the detailed result >

    AT1G55520.2

    Model type
    Protein coding
    Short Description
    TATA binding protein 2
    Curator Summary
    TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.
    Computational Description
    TATA binding protein 2 (TBP2); CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 1 (TAIR:AT3G13445.1); Has 2123 Blast hits to 1580 proteins in 405 species: Archae - 736; Bacteria - 0; Metazoa - 578; Fungi - 191; Plants - 155; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR