K19549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19549

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19549

Determination of introduced cDNA(s)

  • J023010M10 - Rice Full-length cDNAs - Original: J023010M10

    full reading [+] show sequence

    Nucleotide sequence: J023010M10 - full reading 
    GCAGTGGACG GTTTCAGATA TTGCTCTATC ACCTGATCAG CAATTACTTG 
    CATATTCCAG TTTGTCGCCT ACTGTTCACA TAGTGAATGT GCAGAGTTCT 
    GCAAAGGAAT CACAAGCTAA TGTTACTGAA ATTCATGATG GTTTGGAGTT 
    TTCTAATGAT GACGATGATG AATATTCTTT TGGAATATTT TCTGTGAAGT 
    TTTCAAAGGA TGGTCAAGAA ATTGTTGTTG GCAATAGTGA TAGATCTATA 
    AATGTTTATG ATCTTAGAGC AAATAAAGTG TCTGTTCGCA TCCGTGCTCA 
    TGCGGCTGAT GTCAATGCAG TCACCTTCGC TGATGAAAGT GGTAATCTAT 
    TGTACTCTGG AAGTGATGAT AATCTCTGTA AGGTGTGGGA TAGGCGGTGC 
    CTTGCTAGAG AAAAACCAGC AGGTGTTTTG ACAGGACATT TAGATGGGAT 
    TACATTTATT GATAGCCGTG GTGATGGACG TTATTTCATA TCCAACTGCA 
    AGGACCAAAC GATCAAACTT TGGGATGTGA GGAAAATGTC CGCTTCTATT 
    AAAGGCCGTC AACCGAGATT TTTTGACTGG GATTACAGAT GGATGTCATT 
    CCCGTTGGAA GCTCGACACT GTAAGCATCC AAACGATCAG TCTCTGGCCA 
    CATACAGAGG CCATTCAGTT CTGCGGACAC TTATCCGTTG CTACTTCTCC 
    CCAGTGTACA GCACGGGTCA GAGATACATA TACACAGGAT CCAGCGACGA 
    GTATGTCTAC ATCTATGACG TGGTAACTGG GGATATCGTC GAGAAGCTTT 
    CGTGGCATGG ATCGATCATC AGGGACTGTA CCTGGCATCC TTACAACCTG 
    ACAATCGTCA GCTCTTCCTG GGACGGCTAC CTGGCAAGGT GGGAGGCATC 
    AGGGGACGAG GACGACCTTT CTGTGCTCAC GGAAAACGAA CAGAGGACGA 
    GTCCTTACCG TCAGTCGTAC ACACGGCACC TTCTGCTGTA GGGAAGAGAA 
    GTCATTTTGG TTTCCTGTAA GGAGTTGTGA TGTTGCTACA TCTGTAATCG 
    CCTGATTGCA ATGCTCATTG CAACAGTGTA TAGGACTGGG TGCTGCCAAA 
    CTGCATTTTC TGTTGTAGAG AGGCCATTGG TCGCCTGCAA AGAGTTATAT 
    TTGTGCC

    Gene models with high sequence identity

    1. AT4G03020.2 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 2e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40-repeat-containing domain 0
    HMMPanther PTHR19847:SF3 0
    superfamily WD40 repeat-like-containing domain 5.30001985225048e-50
    HMMSmart WD40 repeat 0.529999984878846
    HMMSmart WD40 repeat 0.00000410000049208425
    HMMSmart WD40 repeat 0.00000910000425645573
    HMMSmart WD40 repeat 0.889999997285492
    HMMSmart WD40 repeat 0.0140000007335441
    HMMPanther PTHR19847 0
    Gene3D WD40/YVTN repeat-like-containing domain 1.10000150671643e-47
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    ProfileScan WD40 repeat 2 0
    HMMPfam WD40 repeat, subgroup 34
    HMMPfam WD40 repeat, subgroup 0.00006
    HMMPfam WD40 repeat, subgroup 0.0031
    HMMPfam WD40 repeat, subgroup 1200
    HMMPfam WD40 repeat, subgroup 0.49

    See the detailed result >

    AT4G03020.2

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), WD repeat protein 23 (InterPro:IPR017399), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1).
    Link
    InterPro Scan - TAIR