K19610

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19610

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19610

Determination of introduced cDNA(s)

J033136A07 - Rice Full-length cDNAs - Original: J033136A07

full reading [+] show sequence

CTCGGCCACT CCAGCCCCCC GCAGCATCCG CCCGATCCGC CGCGCGGCTG 
CTTGGCTGTT GGCTCCCACC ACACCTTGGC GTGGCCGTGG CGCGGGTGTT 
GGATCCGTCC GGTCAGCGCT GGCGTCACCC TCCACTCCCT CTCCTTCCGC 
CCTTGCCTCC TCCTCCGCCT AATGCGATCC GACGCGCGCC ACCACCACCT 
CCTCCTCCGA TCCCGCATGC GCCCGGTCCA CCGCGCCTCG CCTCGCTGAC 
CCACGGGGGC CACCTGCTGC TGGTGGTGGT GGACGGACGG AGTTGTCCGC 
GACGGTCTCC CACTTTCCGC CTCTTCCCCA CCACCATCGT TCTCCTTCTC 
TTCTCCCTCT CCCACCTTTC TCCCCCCGCG CGCCCGATCC TTCCCTTCCC 
CCAACTCCCT CTCGCATTTC CCAGCTCGGA TCCTCTTCTG ACTTCTCTCT 
CTCTCTCCGT CTGTCTCTCT CCTCTTTCGA GGTCTTCAGT CTTCAGTGTT 
CTTGACGACC TTGCTGCTTC TTGCCTCTGT TTCGCCTCCT ACTTGCCGTC 
TTCTTCTTCT TCTTGCTGCT GCTGCTGCTG CTGCTGAATT TTTCTTCGGT 
CAGTTAGTCG GTCAGGCCGG TGCCGGTCTG GGAGCGATTC CGCCGGACGC 
ACGCATCAAC AGTGGAGGGA GGGGAGGGGA GGAGCTTCCC CTTTTTGATC 
TAGCAAGTCG TCGTCTCCAA AAATACACTT TTTTTTGTTG GGTCTTTGGA 
ACAAAAGGGT CTCCTCCTTT TGATCTTTCT GTCTCATCAC TAAATTAGCA 
AAGCTTTGTG CTTCGCGGCG ATCTCTTTTC AGCTAATTCA GTCTCTGTTG 
ATAGCTTCGT TGCCCAAGAG AGATCCCCCA TGTCAGAGGC GAGCGGATGA 
CACCGCAATT CGGGTCCGGT TCTTCCGCCT GAGCTGCAGA ATTTTAAGCT 
TCCTCCGTGG TGCCGCCATG GATGCCCTTC CTGACGCCGC CGACGCGGCG 
CAGTTGGCGG CGGCGGCGGC GCCGCCGCAG AAGCGCGACG AGTGGAGCGA 
GAGCGGCATT GTGCGGCTGC TGGAGGCGTA CGAGGCCAAG TGGCTGCTGC 
GGAACCGCGC CAAGCTCAAG TGGAGCGACT GGGTCGACAT TGCCCACGAG 
GTGTCCGCCC ACTGCGCCAT GGAGAACGCC GCCGCCACGG GGAAGCCCGG 
GAGCAGCACG GCCAAGACGC CCAACCAGTG CAAGAACAAG ATCGAGTCCA 
TGAAGAAGCG GTACAGGGCG GAGTCCGCCG CGGCGGCGCG CGCCGGCCCC 
GCCGCCGCCG GTGCTGGCCC GTCGTGGCGG TTCTTCGCCC GCATGGACGG 
CTTGCTCAAA GGCCCCGCCG GCTCCGGCCA GCCGCAGGCG GAGTTGAGCA 
ACAGCATAGA CCTGCGAGCT CCTCCTCCTG CAAAGGTTGA GGTCGATGTC 
GATGCAGATT TCGTCAGTCA GTTAGCTGAT GCAGGGCCGG GTGCACTTTC 
TGAATTGGTG AGTGCATATG CAAACGGCTC GATTCAAGAG AAATTGGACA 
AGGTTGAGAA CAGTGGGCAT GTTGAGGGGA GAGCTGCAGA GAGTGATGTC 
AATGTGAGCT CTCCGAGGAT CAAGGAGGCG AACGAGGATG CCGAGGAGGT 
GGACAAGGTA TGGGACATGT CCAAGAAGAG GAAGAACACG GAGTTTGATA 
TCGCGAAGAG CATCGAGTTG CTGGCAAGCT CATTCTTGAA GATTGAGCGC 
GCAAGAATGG ACCTGTACAG GGAAACAGAG AGGATGAGGG TTGAGGCTGA 
GATTAAGAAG GGTGAGATGG AGCTCAAGAG GACAGAGATT ATGGCAAAGA 
CGCACTTGCA GATCGCTAAG CTTTTCGCAA AGAGATTGAA GGAGTGCAGC 
AGCAAGACTG GTGGTAGCTC ATCTGTAACA GCTGAAGTGG ACAACCATGC 
CAAGAAAGGA GAAAATGGTT CAGGGTGATT GAAACACCAA CCGATCGTCC 
AGAATCCAGA AAGCAGGCTT GTAGTTTTTG GTGTTCTTGT GCACCAAATG 
TATGTCTTTG ATTGATCCGA CTTCACCATG TACGAAGAGA TAGTTAGCTG 
TAAAAGTAAA ATGCAATAAA TGATATGATT GTCCCCATTC AGTGGGGGAT 
TATAGAAGCA GTTTTAGAAT C

Gene models with high sequence identity

AT3G54390.1 [+] show detail - sequence-specific DNA binding transcription factors
E-value: 5e-38; Score: 156.00

InterPro Scan Digest

See the detailed result >

AT3G54390.1

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors
Computational Description: sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR