K19612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19612

Determination of introduced cDNA(s)

  • J013100G18 - Rice Full-length cDNAs - Original: J013100G18

    full reading [+] show sequence

    Nucleotide sequence: J013100G18 - full reading 
    GATCTTATCC AGAACGCCGG AGACGCGAGC GCTGCGAGCA AGCGCAATGG 
    AGGCGAAGCT GTCGGCGGCG TCGAGGCGGG TGGCGCCGTC GCCCATCCAG 
    CAGCTCTCCC ACCTGGCGCA GCGCGCCGGC GCCGTCAACC TCGCCGAGGG 
    CTTCCCCGAC TTCCCGGCCC CCGCCCACGT CAAGGCCGCC GCCGCCGCCG 
    CCATCGCCGC CGACCTCAAC CAGTACAGGC ATGTGCAGGG GATCTGCGAC 
    GCCCTCGCGG AGACGATGAA GCGGGACCAT GGCCTCCGCG TCGACCCTCT 
    CACCGACTTC GCCGTTTGCT GCGGCCAGTC TGAGGCGTTT GCTGCAGCGA 
    TATTTGCAAT AATTGACCAA GGGGATGAAG TTTTGCTCTT TGATCCAGCT 
    TTTGAAACCT ATCAAACGTG CATTGAACTA GCCCGAGGTG TCCCTGTGTA 
    TGTGCCGTTG GATCCACCTT CTTGGACTTT GAATGAAGAT AAATTTTTGA 
    AATCATTTAC AAACCGGACA AAGGCAGTGG TCTTGAATAG CCCGCACAAT 
    CCAACAGGAA AGGTTTTTAG CAGAGAGGAA TTGCTTATCA TTGCTCAAGC 
    TTGTCAGAAA ATGGACTGCT TTGCAATAAC TGATGAGGTT TATGAGTACA 
    TTACTTACGA TGAGAACAAG CATATCTCAT TGGCTTCGCT TCCAGGAATG 
    CAAGAAAGGA CCATCATTAC TTCCTCACTG TCAAAAACTT ACAGCGTAAC 
    TGGTTGGAGA ATTGGATGGG CTTGTGCTCC AGCTAATATC GCCTCAGCAA 
    TAAGAAACAT CCATGTCAAG CTAACTGATT CAGCCCCTGC ACCATTCCAA 
    GAAGCTGCGT TGGTTGCGTT AACAAGCCCA CCAGACTTCT ATTCATCCTT 
    GAAACAGGAC TACACGGCGA GAAGAGACTT CATCCTTCAG GTGCTTACTG 
    ATTTTGGCTT CCGCATTAGC TTCAAGCCCA CAAGGCTCGA TCTTTGTATT 
    TGTTGAGCTT CCAAGGTCAT GGCAACTTTC AGATATGGAT TTCGTGACGA 
    ACTTGATAAA AAATGCTGGT GTGGCGGCCG TGCCTGGTCG GGGATTCTTC 
    CACTCAAGTA CCGACGACCC AAGCTACCAT CACCGGTATG TCAGGTTTGC 
    GTTTTGCAAG AGCAATGACA CCCTAAACGC TGCTGCCGAG AAGATGAGGA 
    AGCTAGCAGT CAGTCATGAT GCAAGGTTAT TGAGGCCTAC TGATGATGGA 
    GAAGCAGGTC AGACTGCATC AGCCACCTCT CCTTGATCAC AGCCATAGTA 
    TCTGCGTTCC AAATGTTATT TTGCTTTAAT TTTTGGGGAA CCATCAAGCA 
    TTCAAGTTGC AGGGTAGAAG TTTGTTTTAA TCAACCGTAG TATAAGTAAA 
    CATTTAAGTC AGAAGATGAC TGTCCTGGTA AGTGTTTAAG CCCAAATGGG 
    TTGCCTTCAT TTTTTATGCA ATCCAAACAG TTCTTAAAAA TCTGAAAAAA 
    AAATATATAT AGCACATAAT CTTGTCATCC

    Gene models with high sequence identity

    1. AT1G77670.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 3e-61; Score: 43.10

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    HMMPfam Aminotransferase, class I/II 9.1e-45
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.0001
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.0001
    HMMPanther AMINOTRANSFERASE RELATED 2.7e-132
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.7e-132
    HMMPanther AMINOTRANSFERASE RELATED 0.000000000028
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 0.000000000028
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.9e-60
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 0.0000000046
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.5e-77
    superfamily Pyridoxal phosphate-dependent transferase, major domain 0.00000000014

    See the detailed result >

    AT1G77670.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Computational Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.3); Has 49407 Blast hits to 49405 proteins in 3078 species: Archae - 1141; Bacteria - 34862; Metazoa - 771; Fungi - 871; Plants - 1354; Viruses - 0; Other Eukaryotes - 10408 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR