K19615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19615

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19615

Determination of introduced cDNA(s)

J013127C12 - Rice Full-length cDNAs - Original: J013127C12

full reading [+] show sequence

GATCTGATAT TACTCATCCA TTCCATCCGC GACAGGGAGC GTAGCATGCA 
GGTGCAGATG CAGATGCAGC AGGCTACCAC CGTTCTCAGC AGCAGCAGCA 
ACCGGCCTTG GACGCTGTGG TGCCATCCTG TCCCAGTAGT CTCCTCCCCA 
TCCCACGCCA AAAATAAGAA GCATTGCCTC CGACTCCGAG CAGGCATGGC 
CATGGCCTCC TCCGAGCTTC CTGACCTGAG CGCAATACAA CGCGTGGTGC 
TGGACATCGA GGGCACCACG ACGCCCATCT CCTTCGTGGC GGACGTGCTC 
TTCCCCTACG CGCGCGACAA TGTCCGCCGC CACCTGGCCG CCACTTACGG 
CAGCAGCGAG GAGACGCGCG CTGACGTGGC CCTGCTGCGG GCGCAGGTGG 
AGGAGGACCT CGCGCAGGGC GTCGACGGTG CCGTGGCGGT TCCGCCGGAT 
GCGGAAGGGG AAGGGGAAGG CGCCGTGGTG GAGGCCCTGG CGGCGAACGT 
GGAGAGCATG ATTCGCGCGG ACAGGAAGGT GACGGCGCTG AAGCAGCTGC 
AGGGGCGCAT CTGGCGGCGG GGCTTCGACA GCGGCGAGCT GCGGAGCGAG 
GTGTACGACG ACGCGGCGGA CGCGCTGCGG CGGTGGCGTG CCAAGGCCTA 
CATCTACTCC AGCGGAAGCA GGGAGGCCCA GCGCCTCATC TTCGCCAACA 
CCGCTGCACA CGGCGATCTC CGCGACCACC TCTGCGGATT CTTCGACACC 
ACAATAGGGG CCAAGCGCGA GGTTAGCAGC TACTACGAGA TCTGGCAGAC 
TCTGGGCACG GACCGCCCCT CCCAGATCCT CTTCTTGACA GACGTCTACC 
AAGAAGCCGC TGCAGCAAAG ACTGCAGGCC TTGAGGTGAT AATATCTGTC 
AGGCCTGGAA ACGCACCCCT CCCTGATAAT CATGGTTTTC ACACAATCAC 
ATCATTCGCT GAAATCTCCA TCTGAACCTA GCCAGAAATG TCTTGTACTA 
TACAATCTGA TCCGAACAAT ATTCTACCGT ACGCTAGCAG CACAGTTAGC 
AAATGGTTTG GTTAGGTTTA AGGCAAGACA ATCTGGGGTG TAAATAAATG 
TGTAATAGTC CCAATCAAGC TAATACTATC ATGCTCCCAT TCCATCCAAA 
CCTGGAACAA CAATTTCAGA TGCATATACT ACTACTTTAC ATTTGTTCCT 
TTTCCT

Gene models with high sequence identity

AT5G53850.2 [+] show detail - haloacid dehalogenase-like hydrolase family protein
E-value: 3e-70; Score: 262.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	3.4e-84
superfamily	HAD-like	3.4e-18
HMMTigr	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	2.6e-70

See the detailed result >

AT5G53850.2

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: L-methionine salvage from methylthioadenosine, L-methionine salvage, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (InterPro:IPR010041), Class II aldolase/adducin, N-terminal (InterPro:IPR001303), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023056L17 - Rice Full-length cDNAs - Original: J023056L17

full reading [+] show sequence

GACCACCGCA TCCTCCCCGC TTTTCCCACT CCCAACCACG ACCGCGGCCG 
GCCGGCGAAT CGCCTCGATT CCGGCGTGCG AATTCCTCCA CCTCGCCGCC 
GCCGCTGCTC GCGACCGATC TTCACCTTCC GCTTCCCCCC CCCTGCAGCC 
GATTGGACTC GATCCTATCC TATCCTATCC TATCCCCGAA CGGGCGATCT 
GGTAGGCGAG AGAGACCAGC CATGTCGGGG GTGTTCGGCA AGGTGTTCGG 
GAAGTCCAAG GCGCAGAGCC AGGCCACCGC GCTGGCCTCC ATCGACAAGC 
TCAGCGAGAC TCTTGAAATG CTGGAAAAGA AAGAAAATTT GCTAGTGAAG 
AAAGCGAATC TTGAGGTTGA GAAGGCCAAG ACCTTCACTA AAGCGAAGAA 
TAAAAGAGCT GCAATACAAT GCTTAAAGAG GAAGAGATTA TATGAGCAAC 
AGATTGAGCA GCTTGGTAAT TTCCAATTAA GGATACATGA TCAGATGATA 
ATGCTGGAAG GTGCAAAGGC TACAACAGAG ACTGTTGATG CATTGAGAAC 
TGGAGCATCG GCGATGAAAG CAATGCACAA AGCGACAAAT ATTGACGACG 
TTGACAAGAC AATGGATGAA ATTAATGACA ATATGGAGAA TATGAGGCAG 
ATCCAGGATC TACTATCTGC TCCTATTGGA GCTGCAGCTG ATTTTGATGA 
AGATGAGCTG GAAGCTGAAT TAGCAGATCT GGAGGGGGAG GAATTGGAGG 
CAGAGCTTCT AGCACCTACA ACGACTGCCC CTACTGCTCC AGTGCGTGTA 
CAGCAACCAA CTCGGCCTTC TGCCCAGAGC AGCAAAACTG AAGATGACGA 
GTTGGCAGCT TTGCAGGCAG AGATGGCTAT GTAATTAGTT TTGCAGGCTT 
TGATAGGGTC ATGCCAAAAG ATCAGATACT TCAAATACTC CTATATTGGA 
CTCTGGTGTA CTCATGAAGA TCTTCCTAGG AAGATGTCAG AGACACAGAA 
GCAAGCTGCA TGCCAGCCTA ACCCGTTATG TATGGTATCA TGTCATGTTA 
CTGCCTTGTA AATCAAACAG AGCTATTTGA GCACATTATG AGCTAATAAA 
ATGTACTACC CGTGATGGCG TCATTATGAT GTGTTTCAGT CTGTACCATA 
TCGTTTTGAC GTTTTTAGTG TAGGTCAATT TATAGTTTCT CTTGATTCGA 
ATCTGAAGTA CTACATTGAT GGTCGAATAT AGACAGTTCT CTAAATAATG 
TGAATGATGA TTGTATAGGG TGCTGTACAT TCCTTCAGTT GTTGGTACTG 
TCGACCTGTA ATAAATTATT AACCTAGGCT TTGTAGCTGT CTAAACAGTG 
ATGTATATTA GTCGTG

Gene models with high sequence identity

AT2G19830.1 [+] show detail - SNF7 family protein
E-value: 4e-60; Score: 229.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	SNF7 - RELATED	4.2e-26
HMMPfam	Snf7	1.8e-43

See the detailed result >

AT2G19830.1

Model type: Protein coding
Short Description: SNF7 family protein
Computational Description: SNF7.2; INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT4G29160.3); Has 1789 Blast hits to 1789 proteins in 248 species: Archae - 16; Bacteria - 15; Metazoa - 681; Fungi - 406; Plants - 433; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link: InterPro Scan - TAIR