K19626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19626

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19626

Determination of introduced cDNA(s)

  • J033082K10 - Rice Full-length cDNAs - Original: J033082K10

    full reading [+] show sequence

    Nucleotide sequence: J033082K10 - full reading 
    GCCCTCCTCT GACTCCAACC CCCGCAAACC CCAATCCGCC GCCGCGGCGA 
    TCGCCATGGC CGCCTCCGCC GCTGCTTCCC GCGCGCAACG CCTATCTCGC 
    ATCTTCTCCT CTTCTTCTCC ATCCGTGCGA CCACCCAAGC CCGGGCAGGT 
    CAAGGAAGCA CCAAAGCCCG CGCCGACCAA GAAAGCTCCT GCTCCCGGCG 
    CCGAGGCGAA CCCCAACTTG CGCCGGAATG CCATCGACGA CATCATCAAG 
    GGCCTCTTGC GGGAGCGCGA CCCGGACAAG CTGGTGTCCG GGTTCATCGC 
    CGCCTCGTCC ACGCACCCGC GCTTCCGTGC CCGGCACCGC GTGTACGACG 
    TGGCCGTGTC CCGCCTCGCG ACCTTCGGCC GCCTGGACGG CGTCGAGGCC 
    ATCATCGACG CGCAGAAGCC CTTCCTGGAG ACCTCCAAGG AGGGATTCGC 
    CGCGCGCCTC ATCCGCCTGT ACGGCCACGC ATCCATGGCT TCCCACGCCG 
    CTGCGACGTT CCATGACCTC CCCCCGCAGC TTAAGTCTAC CATGACCTTC 
    AACTCTCTCC TCGCAGCCTA CGTCGAGGCT GGAGAGTTCG AAGCGCTTGC 
    CGCCGCGTTC AAGGAGATCC CAGTCTCCAA CCCCTCGGTT GTACCTAGCG 
    TGTACTCCTA TAACATACTC CTTCAAGCGC TATGCAAGGT GCCCGACCTC 
    TCGGCGGCAC TTGATACTAT GACACTCATG GAGAAGTCTG GAATTTCACC 
    CGATCTGGTC ACTTTCAACA CGCTATTGAA TGGATTCTAC AACCATGGAG 
    ACATGGATGG CGCTGAGAAA GTCTGGGAGA TGATTACGGA GAGGAATATG 
    GTGCCGGATG CAAAGAACTA TAATGCAAAG TTGAGGGGCC TTGTTGCGCA 
    AGGGAGGATT GAGGATGCAG TTGCAGTGGT TGAAAAAATG GAGAAGGATG 
    GACCAAAGCC TGATACAATA TCCTACAATG AGTTGATTCG AGGGTATTGC 
    AAAGATGGGA GGTTAGAGGA AGCCAAGAAG CTGTTTGAAG ATATGGCAGA 
    AAATGGTTAT GTTGCGAATA GGGGGACATA TCATACCCTC ATACCATGTC 
    TTGTCAAGGC TGGTGAGCTC GATTATGCTC TGAAGTGCTG TCATGAGATA 
    TATGGTAAGA ACCTTAGAGT GGACTGTTTT GTGCTGCAAG AGGTAGTGAC 
    TGCATTGGTC ACGGCATCGA GGGTGGAGGA TGCCACCAAG ATTGTTGAGC 
    TTGGATGGAA CAACTCCTAC CCACGGAGGA TCTTGAATAT TCCACATGCT 
    ACAGAGAAAA ACAAGGAAGA ATCAATTTCA GAAGAGGAAG AGGAGCCTGA 
    AAATGCTTGA CAAGGATGTA CCTCCATGTG TTCTTCTCTG ATCAGTCTTA 
    CCGATGGTTA TCATTTTGCT ATAGTATACT AGTCTGCTGT TGCGGACATT 
    GGAAGTATCT CATATTGTCA CAAATGAGAT GTCGGGTGTG TATTTGTCTC 
    TATCGCTATA TTCTGGAAAA CTAGAAACAT CTGAGCTATG TTGTTATTCA 
    AGCCTTCCAC AGATCTTGTG CAGATGTCTG GATTTTGTTG GTGCAGATGC 
    TTTGTTTGGC ATGGGCCAAA ATGTAACGAT TCCTGTCGAT GGGCTAGGAT 
    TTGAGCTTAA TTCTCGGCCT CTAGTGAACT GCCGGGGACC GCGCCAAACA 
    AGAAGGTCAG TCCAGGTCTC CAGGACATGT TTGGTTCAGT TTCAAATGTT 
    GCCGCACCAT TGTTGCCAAA ACAAAAATGA TGACATGGAA TCTCAACAGT 
    CATGTGCAAA ATTGTTTTAC TTCCTCCGTT CCAAAATATA AAGGATTTTG 
    GATGGAGATG TGTCCCGGAT TTTGGATTTG GACAGGAAGT TTGTCCATAT 
    TCTAGTACTA GGATGTGTTC CGTCCATCCA AATTCTCTTA TATTTTGTGA 
    CGGAGGGAGT AATTGAAGTG TTTAAGAAAA TGTGCTAAAT TCTATGACTT 
    TTTAACCTGT AAACTGCAAG GGATCTTATG TGGTTTGAGT TTCATTCAAC 
    AAAGATATGT AGAGGAAAAA AAATATGTTT TTG

    Gene models with high sequence identity

    1. AT1G55890.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 5e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.76
    HMMPfam Pentatricopeptide repeat 0.048
    HMMPfam Pentatricopeptide repeat 2e-05
    HMMPfam Pentatricopeptide repeat 0.11
    HMMPfam Pentatricopeptide repeat 1.2e-09
    HMMPfam Pentatricopeptide repeat 0.19
    superfamily TPR-like 1.9e-17
    HMMTigr Pentatricopeptide repeat 0.024
    HMMTigr Pentatricopeptide repeat 2.2e-06
    HMMTigr Pentatricopeptide repeat 1.3e-07
    HMMTigr Pentatricopeptide repeat 0.00017
    HMMTigr Pentatricopeptide repeat 3.8e-10
    HMMTigr Pentatricopeptide repeat 0.0014
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7.9e-75
    ProfileScan Pentatricopeptide repeat 10.72
    ProfileScan Pentatricopeptide repeat 7.552
    ProfileScan Pentatricopeptide repeat 11.488
    ProfileScan Pentatricopeptide repeat 10.797
    ProfileScan Pentatricopeptide repeat 14.02
    ProfileScan Pentatricopeptide repeat 7.925

    See the detailed result >

    AT1G55890.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR