K19627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19627

Determination of introduced cDNA(s)

  • J023010L21 - Rice Full-length cDNAs - Original: J023010L21

    full reading [+] show sequence

    Nucleotide sequence: J023010L21 - full reading 
    GACGCATGCA GCTTCCCTCG TCGGGGAAGA CGACGTACGA CCCCGACGTA 
    CTACGCGCCC ACGCACGCAC GACGGGACGG CCGGCCTCCT CACCTCGCTC 
    GCTCGCGCCG CGCCGCTCGC CGGCAAATCC ACCACGCCAT GGCGTTCCCT 
    GCACCCTCCT CCTCCTCCCC TCGCCGCCGC GGCCGCGGCC TCGCCTACCT 
    CCTCGTCTCC GTCCTCCTGC TCGCGTCCCG CGTGCCGGGC GCCGCCGGCG 
    CGGACTCGGA GTTCGAGGAC GGCGTCTCGC CCAAGTTCCC CGGCTGCGAC 
    AACCCCTTCC AGAAGGTGAA GGTGACGTAC TGGGTGGACG GCGACGAGAG 
    GAGCAGCCTG ACCGGGATCA CGGCGAGGTT CGGCGAGGTG CTGCCGGCCA 
    CCGGCTCCGA CGGCGACAAG CGGAAGGCCG TGGTCCCCGC CCCGAAGACC 
    GGCTGCGCCA AGTCATCCGC GCCGCTTGCT AGCTCCATTG CCGTGGCGGA 
    GCGCGGGGAG TGCACGTTCC TGGAGAAGGC CAAGACGGCG GAGTCCGGCG 
    GCGCCGCCGC GCTGCTCCTC ATCAACGACG AGGACGATTT GCAGAAGATG 
    GTGTGCACCC AGAACGACAC GGTCCCTAAC ATTGGCATCC CGGTCGTGAT 
    GGTATCCCAG TCTGCCGGTC GCAAGATCCT CTCCGGCATG GACGGTGGGG 
    CAAAGGTTGA CATTCTGATG TATGCGCCGG AGAAGCCGAG TTTCGATGGC 
    GCTATACCTT TCCTCTGGCT GATGGCCGTC GGCAGCGTGG CCTGTGCGTC 
    CGTTTGGTCC TTCGTCGTCG TCGGCGACGA GGATAAGAAT GCTCCTACAC 
    TGGGTGGAGA AGAAGCTGCT GACTCTGAAA TCGTGGAGCT GCAGACCAAA 
    ACCGCGCTCG TGTTCATCGT CACCGCGTCG CTTGTCCTGC TGTTCCTGTT 
    CTTCTTCAAA TCCACCTGGT CTGCATGGCT GCTGGTTGTG CTGTTCTGCC 
    TCAGTGGTCT CCAGGGATTG CACTATGTTG CCTCGACTCT AATTGTAAGA 
    ACTTGTGATC GGTGCCGCGA AGCAAAAGTA GCTCTTCCTG TATTAGGGAA 
    CGTGACAGTG GTTACACTTG TCATCCTACC ACTAGCTTTG ATCTTCGTTG 
    TCGTTTGGGC TGTACACCAG AATTCACCGT TTGCTTGGGT TGGTCAGGAT 
    CTTATGGGCA TCTGCATGAT GATTCTTGTA TTGCAAGTGG TCCATCTGCC 
    AAATATCAAA GTTGCAACAG CGCTTCTTGT GAGCGCTTTC ATGTATGACA 
    TTTTTTGGGT GTTCATATCA CCTTTCATAT TCAAGAAAAG TGTCATGATC 
    ACAGTTGCTC GTGGTAGCGA TGAGGGACCT AGCCTTCCCA TGGTTCTGAA 
    GATGCCAAAG GAGTTTGATA CATGGAATGG CTATGACATG ATCGGATTTG 
    GGGACATTCT TTTCCCAGGA CTACTTGTTG CTTTCAGTTT CAGGTATGAC 
    AGAGCAAATG GAAAGGACTT GACTGACGGC TATTTCCTCT GCCTAATGAT 
    CGGTTACGCC TTCGGTTTGT CATGCACATA TGTTGGCCTG TACCTAATGA 
    AGAGTGGACA GCCAGCTCTC CTCTACCTAG TCCCATCAAC ACTAGGAACT 
    ATTGTCACGC TAGGTGCGAA AAGAGGAGAG CTAAGTCAGC TCTGGAATGC 
    TAAAGTATAG CTTGTGAAAT ATTGATACTT GCTTGCAGTC TTGCAGCATT 
    GTACTAGTTA GAGAAGCGAT CATTGATCTG TATATGAGAA TATCTGATGG 
    TTGTTGGTAA ATATATCATG CCAACCATCT GCACGAACTT TGGTTAGATT 
    TCTTTTTTCA GTGTACACTT ACCATGAATG GTGGTTATTA GTGCGAAGCA 
    GTATGCTCTG GCTGTAAATG TCATGGCTGT GATGTAAATG TGAACAGAAT 
    TATATTCTCT GTGTCTTGAT GTGTTCTTAG CTGGGTGTAA TATAAAAAAT 
    CCACTTTGTT TCAGAAACTT CAGATGTTGC TC

    Gene models with high sequence identity

    1. AT1G05820.1 [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 5
      E-value: 1e-129; Score: 461.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNAL PEPTIDE PEPTIDASE-LIKE 2A 5.7e-87
    HMMPanther Peptidase A22B, signal peptide peptidase 5.7e-87
    HMMSmart Peptidase A22, presenilin signal peptide 1.6e-81
    HMMPfam Peptidase A22B, signal peptide peptidase 6.2e-81
    HMMPfam Protease-associated PA 5.5e-12
    superfamily Transferrin receptor ectodomain, apical domai 7.7e-28

    See the detailed result >

    AT1G05820.1

    Model type
    Protein coding
    Short Description
    SIGNAL PEPTIDE PEPTIDASE-LIKE 5
    Computational Description
    SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR