K19627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19627

Determination of introduced cDNA(s)

  • J023010L21 - Rice Full-length cDNAs - Original: J023010L21

    full reading [+] show sequence

    Nucleotide sequence: J023010L21 - full reading
    GACGCATGCA GCTTCCCTCG TCGGGGAAGA CGACGTACGA CCCCGACGTA 
    CTACGCGCCC ACGCACGCAC GACGGGACGG CCGGCCTCCT CACCTCGCTC
    GCTCGCGCCG CGCCGCTCGC CGGCAAATCC ACCACGCCAT GGCGTTCCCT
    GCACCCTCCT CCTCCTCCCC TCGCCGCCGC GGCCGCGGCC TCGCCTACCT
    CCTCGTCTCC GTCCTCCTGC TCGCGTCCCG CGTGCCGGGC GCCGCCGGCG
    CGGACTCGGA GTTCGAGGAC GGCGTCTCGC CCAAGTTCCC CGGCTGCGAC
    AACCCCTTCC AGAAGGTGAA GGTGACGTAC TGGGTGGACG GCGACGAGAG
    GAGCAGCCTG ACCGGGATCA CGGCGAGGTT CGGCGAGGTG CTGCCGGCCA
    CCGGCTCCGA CGGCGACAAG CGGAAGGCCG TGGTCCCCGC CCCGAAGACC
    GGCTGCGCCA AGTCATCCGC GCCGCTTGCT AGCTCCATTG CCGTGGCGGA
    GCGCGGGGAG TGCACGTTCC TGGAGAAGGC CAAGACGGCG GAGTCCGGCG
    GCGCCGCCGC GCTGCTCCTC ATCAACGACG AGGACGATTT GCAGAAGATG
    GTGTGCACCC AGAACGACAC GGTCCCTAAC ATTGGCATCC CGGTCGTGAT
    GGTATCCCAG TCTGCCGGTC GCAAGATCCT CTCCGGCATG GACGGTGGGG
    CAAAGGTTGA CATTCTGATG TATGCGCCGG AGAAGCCGAG TTTCGATGGC
    GCTATACCTT TCCTCTGGCT GATGGCCGTC GGCAGCGTGG CCTGTGCGTC
    CGTTTGGTCC TTCGTCGTCG TCGGCGACGA GGATAAGAAT GCTCCTACAC
    TGGGTGGAGA AGAAGCTGCT GACTCTGAAA TCGTGGAGCT GCAGACCAAA
    ACCGCGCTCG TGTTCATCGT CACCGCGTCG CTTGTCCTGC TGTTCCTGTT
    CTTCTTCAAA TCCACCTGGT CTGCATGGCT GCTGGTTGTG CTGTTCTGCC
    TCAGTGGTCT CCAGGGATTG CACTATGTTG CCTCGACTCT AATTGTAAGA
    ACTTGTGATC GGTGCCGCGA AGCAAAAGTA GCTCTTCCTG TATTAGGGAA
    CGTGACAGTG GTTACACTTG TCATCCTACC ACTAGCTTTG ATCTTCGTTG
    TCGTTTGGGC TGTACACCAG AATTCACCGT TTGCTTGGGT TGGTCAGGAT
    CTTATGGGCA TCTGCATGAT GATTCTTGTA TTGCAAGTGG TCCATCTGCC
    AAATATCAAA GTTGCAACAG CGCTTCTTGT GAGCGCTTTC ATGTATGACA
    TTTTTTGGGT GTTCATATCA CCTTTCATAT TCAAGAAAAG TGTCATGATC
    ACAGTTGCTC GTGGTAGCGA TGAGGGACCT AGCCTTCCCA TGGTTCTGAA
    GATGCCAAAG GAGTTTGATA CATGGAATGG CTATGACATG ATCGGATTTG
    GGGACATTCT TTTCCCAGGA CTACTTGTTG CTTTCAGTTT CAGGTATGAC
    AGAGCAAATG GAAAGGACTT GACTGACGGC TATTTCCTCT GCCTAATGAT
    CGGTTACGCC TTCGGTTTGT CATGCACATA TGTTGGCCTG TACCTAATGA
    AGAGTGGACA GCCAGCTCTC CTCTACCTAG TCCCATCAAC ACTAGGAACT
    ATTGTCACGC TAGGTGCGAA AAGAGGAGAG CTAAGTCAGC TCTGGAATGC
    TAAAGTATAG CTTGTGAAAT ATTGATACTT GCTTGCAGTC TTGCAGCATT
    GTACTAGTTA GAGAAGCGAT CATTGATCTG TATATGAGAA TATCTGATGG
    TTGTTGGTAA ATATATCATG CCAACCATCT GCACGAACTT TGGTTAGATT
    TCTTTTTTCA GTGTACACTT ACCATGAATG GTGGTTATTA GTGCGAAGCA
    GTATGCTCTG GCTGTAAATG TCATGGCTGT GATGTAAATG TGAACAGAAT
    TATATTCTCT GTGTCTTGAT GTGTTCTTAG CTGGGTGTAA TATAAAAAAT
    CCACTTTGTT TCAGAAACTT CAGATGTTGC TC

    Gene models with high sequence identity

    1. AT1G05820.1 [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 5
      E-value: 1e-129; Score: 461.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNAL PEPTIDE PEPTIDASE-LIKE 2A 5.7e-87
    HMMPanther Peptidase A22B, signal peptide peptidase 5.7e-87
    HMMSmart Peptidase A22, presenilin signal peptide 1.6e-81
    HMMPfam Peptidase A22B, signal peptide peptidase 6.2e-81
    HMMPfam Protease-associated PA 0.0000000000055
    superfamily Transferrin receptor ectodomain, apical domai 7.7e-28

    See the detailed result >

    AT1G05820.1

    Model type
    Protein coding
    Short Description
    SIGNAL PEPTIDE PEPTIDASE-LIKE 5
    Computational Description
    SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (SPPL5); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (TAIR:AT2G43070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR