K19635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19635

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19635

Determination of introduced cDNA(s)

J013065L12 - Rice Full-length cDNAs - Original: J013065L12

full reading [+] show sequence

GAGCTGCTAC TGCTCCTCTT CTCATCGCCA CGCTACCTCT CAATGGAGGC 
CTTCCTCGCC GGCTTCCGGG CGCCGCGGCC GCGGGTCCCG GCCGTCTCCG 
CCGCCGCCCG GAGCCTCCCT CCCAACACCT CCTTCTTCTC CGGCGGAAGG 
CGGCGCAGGA GGCTTCTTTC CTCATCGGTG GTCTGCATGG CGGAGCCCTA 
TCTCATAGCA AAGTTGGATT CTGCAGAGAA GGCTTGGAAG GAAATGTCGG 
TTAGATTGGC TGATCCTGAT ATAGTTTCGG ATCCCAGCGA GTACCAAAAA 
CTTGCACAAT CAGTTGCTGA ACTAGATCAG GTTGTGAGTA CGTACAGGCA 
GTTTAAGGAC TGTGAGAAGC AAATTGAAGA AACAAAAGTT TTGCAAAAAG 
AGAATGAAGA TGACCCAGAT ATGGCAGAGA TGATTGATTC AGAGATGGAG 
TCTCTATCTA ACCAGCTTGA AGAGCTTGAG GAAAAACTGA AGTTACTACT 
GCTTCCCAAT GATCCTCTTG ATGCACGCAA CATCTTACTT GAAGTAAGAG 
CAGGTGCTGG TGGTGATGAA GCTGGAATTT GGGCTGGTGA CCTTGTGCGT 
ATGTATCAAA AATACTGTGA GCGCAACTCC TGGAAGTTCA AACCAGTTTC 
CAGCTCAGAA GCAGAAAAGG GTGGGTTCAA GACATATGTG ATGGAGGTGA 
AGGGCAAACA AGTCTACAGT AAACTGAAGT TTGAGTCAGG TGTACACCGT 
GTTCAGCGCG TTCCTCAGAC AGAGACTATG GGCCGTGTTC ACACATCAAC 
AGCAACTGTA GCTATTATGC CAGAGGCTGA TGAAGTTGAT GTGGTTATCG 
ATCCGAAAGA TATTGAACTC AAAACTGCAA GATCTGGTGG AGCTGGAGGG 
CAGAATGTTA ACAAGGTGGA AACTGCTGTT GATCTTATTC ACAAACCTAC 
GGGAATTCGG ATATTCTGTA CAGAAGAAAG GTCACAACTC CAAAATAGAG 
AACGCGCATT CCAATTGTTG AGAGCAAAGC TTTACGAGAT AAAATTACGG 
GAGCAGCAGG AATCTATAAG AAACCAGAGG AAACTGCAGG TTGGAACTGG 
TGCTCGTTCT GAGAAGATAA GGACGTACAA TTATAAGGAC AACAGAGTGA 
CAGATCACCG GTTGAAGATG AACTTTGAAC TCACTGGTTT CCTCATGGGA 
GATATCGAGT CGGCTGTGCA GTCCTGTTCT TCAATGGAGC AGAAGGAACT 
CCTGGAGGAG ATGGCCACAT CTGTGGGCGC AGCGAAGGTA TGATCAGCGC 
GATCGATCTG TCTGCAGTCC TCCTTCCACC TGAGTACCAG ACCATCAGAT 
AGAAATCATC CAATGGACAT TGTGTTGAAA CGGGTGGTGA TCAATGGACA 
AATGTACATG AAGAAATCCG AAGATACATA TACATATGCT TCCGTTGCTC 
ATGAGCATGA CTAATGTCAG AAAACACACT GATGCATTTT CAGTTCCTCT 
TACAGTTACA AATTTTGAGT AGTTGGATAT ATGCAATGTG TACATCTCAA 
CAGTTGCATA GCTACAATAT GCATTATGCA CAATTCAACC TGTTAATAGA 
TGGGAATG

Gene models with high sequence identity

AT3G62910.1 [+] show detail - Peptide chain release factor 1
E-value: 1e-152; Score: 536.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Peptide chain release factor 1	1.2e-190
HMMPfam	Peptide chain release factor	7.5e-41
HMMPfam	Class I peptide chain release factor	1.4e-38
PatternScan	Class I peptide chain release factor	0
superfamily	Release factor (Pfam 00472)	1.8e-93
HAMAP	Peptide chain release factor 1	34.349
Coil	coiled-coil	0
HMMPanther	PEPTIDE CHAIN RELEASE FACTOR 1	4.4e-204
HMMPanther	PEPTIDE CHAIN RELEASE FACTOR	4.4e-204

See the detailed result >

AT3G62910.1

Model type: Protein coding
Short Description: Peptide chain release factor 1
Curator Summary: Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.
Computational Description: ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink).
Link: InterPro Scan - TAIR