K19636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19636

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19636

Determination of introduced cDNA(s)

  • J033034G17 - Rice Full-length cDNAs - Original: J033034G17

    full reading [+] show sequence

    Nucleotide sequence: J033034G17 - full reading 
    GATTGATCGT TTACAGCAGC GTCAATACTG TAATAATTGA CCAAACTGTC 
    AAAGCAGTTT GTGACAACAT TACGTGTGAT TTTGGTGCGC GCAGGGAGAT 
    CATGCACGCG ATGTGGAGGC CGCAGAAGTT CAAGGCGATC TACCTGATGG 
    CGACGCTGTA CGTGCTGACG CTGACGCTGC CGTCGGCGGC GAGCGTGTAC 
    TGGGCGTTCG GGGACGAGCT GCTCACGCAC TCGAATGCGC TGGCGCTGCT 
    GCCGCGCACG GCGTTCCGGG ACGCCGCCGT GGTGCTCATG CTCATCCACC 
    AGTTCATCAC CTTCGGCTTC GCCTGCACGC CGCTCTACTT CGTCTGGGAG 
    AAGCTCATCG GACTCCACGA CTGCCGCAGC CTCTTCAAGC GCGCCGCCGC 
    GAGGCTCCCC GTCGTCGTGC CCATCTGGTT CCTCGCCATC ATCTTCCCCT 
    TCTTCGGGCC CATCAACTCC GCCGTCGGCT CCCTCCTCGT CAGCTTCACC 
    GTCTACATCA TCCCCGCCCT CGCGCACATG ATCACCTTCC GCTCCGCGCA 
    CGCTCGTGAG AACGCCGTGG AGCCGCCGCC GCGGTTCGTG GGGCGATGGA 
    CGGGCACGTT CATCATCAAC GCGTTCGTGG TGGCGTGGGT GCTGGTGGTC 
    GGCTTCGGGT TCGGCGGCTG GGCCAGCATG ACCAACTTCG TCCGCCAGAT 
    CGACACGTTC GGGCTCTTCA CCAAGTGCTA CCAGTGCCCG CCGCCCCCTC 
    TGCCGCCGGC GGGCGCCGCT CCGAACGCCA CCTGGCCGCC GTTCCCGGCG 
    ACGCCGTTCA ACGCCACCAC CGCCGGCCTC GCTCCGGCCC CTGCTCCTTC 
    GCCGGCGCAT TTCTTCGGCC GCCACCACCG GCATCACAGC CACGGGCTCT 
    GAACACTGAA ATGTACGTAC CAGGGCAATG CTCGAGCTTT GGTTTAGCTA 
    TAGTTGTTCA CTAGCGCCGT CACTAATTAG TCATAGCTTA GCACAAAGCT 
    GCATCTTCTC TAGCTATCAG TAGCATGTCA GTCAGACGGA GTATCCCGTT 
    TCAAGTTCCT TGGTTCTGTA CTGCCTCCTG GCGTGGAGCT CAAAAAACGA 
    ACAGAAAAAA AGGGAATGTT GCTACGGCCG CAGATGCAAG AGCCAGCTAA 
    TCT

    Gene models with high sequence identity

    1. AT2G21050.1 [+] show detail - like AUXIN RESISTANT 2
      E-value: 1e-95; Score: 347.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUX1-LIKE AMINO ACID PERMEASE 2.4e-141
    HMMPanther AMINO ACID TRANSPORTER 2.4e-141
    HMMPfam Amino acid transporter, transmembrane 1.1e-31

    See the detailed result >

    AT2G21050.1

    Model type
    Protein coding
    Short Description
    like AUXIN RESISTANT 2
    Curator Summary
    Encodes LAX2 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
    Computational Description
    like AUXIN RESISTANT 2 (LAX2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUX1 3 (TAIR:AT1G77690.1); Has 1017 Blast hits to 1012 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 224; Plants - 668; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR