K19637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19637

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19637

Determination of introduced cDNA(s)

J033130E19 - Rice Full-length cDNAs - Original: J033130E19

full reading [+] show sequence

GGTCCTGGCT AGCTGCTGCG CGCTGACCAG CTAGCTGCCA ATTGCTCCCT 
GTGAGCTGCG TGCTGCGAGA GGTCAAGCTA GCTGTAGTGG TCATGGCGAG 
CGTCCCGCTC CTCGCGGAGT GGCCGGCCGG GAAAGAGAAG GAGGAGGGGC 
GCGTCCGGCG GCGGCTGCCG GCGTTGGCGA GGGAGGCGTG GGAGGAGTCC 
AAGAAGCTGT GGGAGATCGT CGGCCCGGCC GTGTTCCTGC GGCTGGTGCT 
GTACAGCTTC AACATCATCA GCCAGGCCTT CGCCGGCCAC ATCGGCGACC 
TCGAGCTCGC CGCCTTCTCC ATCGCCAACA ACGTCATCAC CGGCCTCAAC 
TTTGGCTTCC TGCTGGGCAT GGCTAGTGCA CTGGAAACAC TCTGCGGCCA 
GGCCTACGGC GCAAAGCAGT GCTCCATGCT TGGCATCTAC CTACAACGTT 
CTTGGATCAT CCTCTTCGTC TTCGCCGTGC TCCTCGTCCC GACCTACGTC 
TTCACCGCCC CGCTGCTCGA GGCGCTGGGC CAGCCCGCCG CGCTGGCGCG 
CAAGGCCGGC ATGGTCAGCG TGTACATGCT CCCGTCGCAC TTCCAGTACG 
CCGTCCTCCT GCCGCTCAAC AAGTTCCTGC AGAGCCAGCG CAAGAACTGG 
GTCACCGTGG TGACCGCGGC GGCGGCGTTC CCGGTGCACA TCGCGGTGAG 
CTGGCTGCTG GTCAGCCGCC TCCGGTTCGG GGTGCTCGGC GCCGCCATGT 
CGCTCGGTGT CTCCGGCTGG CTCGTCACGC TGCTGCAGCT CGCCTACGTC 
GTCGGCGGCG GGTGCCCGGT GACGTGGAGT GGGTTCTCCC CGTTGGCGTT 
CGTGGATTTG TGGGGTTTTG TCAAGCTGTC CGTCTCGTCT GGAGTTATGG 
TATGTTTGGA GACTTGGTAC TACAAGATAC TGATCCTGCT CACAGGACAC 
CTGAAGAATT CTGAACTTGC AGTGAATGCT CTTTCTATCT GTATGAGTTT 
TCAATCTTGG GAGATGATGA TTCCAGTGGG ATTCTTAGCC GGCACCGGGG 
TGCGAGTGGC TAACGAGCTT GGCGCGGGCA ACGGGAAGGG AGCAAAGTTC 
GCGACGATCG TGTCGACGAC GACCTCCTTC CTGATCGGCC TCTTCTTCAG 
CGCGCTGGCG CTGGCCTTCC ATGACAAGAT AGCGCTCGTC TTCTCGTCGA 
GCAATGCGGT GATCGACGCC GTGGACAACA TCTCCTTTCT GCTAGCCGTC 
ACCATCCTCC TCAACGGCGT CCAACCTGTT CTTTCAGGGG TTGCTATTGG 
TTCAGGGTGG CAAGCGGCAG TGGCCTATGT AAACATCGGA TGCTACTACT 
TCATCGGAGT TCCTATCGGT GTTCTGCTTG GTTGGAGTTT CAACCTTGGA 
GTTTTTGGAA TTTGGGCTGG AATGATCGCT GGCACTGCAA TCCAGACTAT 
AATTCTGGCG CACATGACCA TTCAGTGTGA TTGGAACAAA GAGGTTTTGC 
AAGCAAGTGA ACGCGTCCAA AGATGGGGGA ACCCAAAATG AACAGGAGCA 
AGTATATTAT GTGTTCGTAC TAGCAGTATT GTGGATTGTT CACTGTATCA 
ACAGGTTTTC CATGTTGGAG AATTGGGCTT GCTTGCTTGA GTTGCGGCTT 
GTAATTTGTA GAACTTTAGT TTAGAATTTG GTTGGTTACT CTACTTGCTT 
GACGCCTTGT TC

Gene models with high sequence identity

AT5G65380.1 [+] show detail - MATE efflux family protein
E-value: 3e-162; Score: 568.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Multi antimicrobial extrusion protein MatE	4.1e-24
HMMPfam	Multi antimicrobial extrusion protein MatE	3.2e-33
HMMPanther	MULTIDRUG RESISTANCE PUMP	2.5e-242
HMMPanther	Multi antimicrobial extrusion protein MatE	2.5e-242
Coil	coiled-coil	0
HMMTigr	Multi antimicrobial extrusion protein MatE	2.4e-73

See the detailed result >

AT5G65380.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G44050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR