K19645

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19645

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19645

Determination of introduced cDNA(s)

  • J023093E24 - Rice Full-length cDNAs - Original: J023093E24

    full reading [+] show sequence

    Nucleotide sequence: J023093E24 - full reading 
    GCTTTTCACC TCCCCACGCC CGAATCGACG AGGCACCGAA AAAAAGAAAA 
    AAAAACACAC AAAAAATAAA GAAGGGAGAA CGAAGCCGAC CACCCCCATC 
    GGTTCCCCTT CCTCCTCGCA GATCTCCGAC GCCGGCCGGC CACCGCCATG 
    AACTCCTACT CCGGCGACCG CTCCTCCTCC TCCTCCTCCT CCCGCCCCAC 
    CACCACCTCC TTCGACTCCT ACCAGTTCGA CTTCGGCGTC AACTCGTCCC 
    GCTCCTCTGC GTCCCGCCCC CTCAGACCGG GGCCCGGGGC CACCGCGGGG 
    GGCGCTGCCG CCGGCGGTGT AGGCGTCGGC GGCAGCGCGT GGACGCACCA 
    GCCGGCTAAG ACGACGTCGT GGACCCACCA GCCGTCGCCC GCCTCCGCGG 
    CGGCGGGGGC TGGATCCGGG CCCACGTCCA TGGTCGGCGA CATCTTCGGC 
    CGGAGCTGGT CCTCCGCCGC GCCGTCCTCC GGCCTCGGCA TCCCGCAGGC 
    CAACAACCCC GGCCTCTTCA GCGACCTCCT CGGCTCCGCG CTCGGGTCGT 
    CCTCCCGCGG CCAGCCCAAC GCGCCGCTCA GATCTTCGGC GCCGCAGACC 
    TACAAGCCGG CCAACGCCAA CCCAAACCCT AGCGGCTCTC CGTTCTCGAT 
    GGGCGGCATG GCGAGCACGC TCCCGAAGAC GACCACCGGG TCGCCGATGT 
    CCTCCGGTGG TGGCGGGTAT GGTGTTGGTG GCCGTCCGAT GAAGCCGGCG 
    GGCATGGCGT CGGCGGCCGC GGCACAGCCG ATGATGGGGC AGAAGAAGGA 
    TCCGTTCGGT TCAATAGACC CCTTCGCTGC GAAGCCCGGT TCTATGAATG 
    CTGCAAAGAA GGCTAATCCC GTCAAGCCGG ATCAAGGTTT TGGGGCGTTC 
    CAAGGCGTGA ATTCAGGTGG CATTGCAGGA TTATCGGGCT TCCAGACCGC 
    TGACAGTGGA TTTGGTAGCT TCCAGAGTTC CGGTGCTGTG AAACCTTCCA 
    GCTTTACTCC ACTGGCACCA GCTCCAGCGC CTGCTCCTGC GGCTGCTGCA 
    GCGAACTCCG GTGTAGATCA CTTGGACTCG CTGTTTGCTT CGACAACAGC 
    TGCTCCGACT GCGGTGAGTA ATGGTGGTGG GGGGGGTGAC ATGTTTGGTG 
    AGATGGATGG CTGGGTGGAT GTGGAGGCAG ATTTTGGTAG TGGTGACAGC 
    GGTGGCGCAA CCACAGAGTT GGAGGGACTC CCACCGCCAC CGTCTGGGTT 
    GACAGCATCT GCTGCTAAGT CCAAAGGGAT GGATAATTAC AAGGGTGGGC 
    AGTATGCTGA TGCGATCAAG TGGCTGTCAT GGGCCGTTGT ACTCATTGAG 
    AAGTCTGGGA AGTATGCTGA CATTGTAGAG GTGCTGTCAT CAAGGGCTTC 
    ATCTTACAAG GAGGTTGGGG AGTACAAGAA GGCAATTGCC GACTGTTCGA 
    AGGTACTAGA GAAAGATAAG GATAATGTTT CGGTGCTTGT CCAACGTGCC 
    CTTCTATATG AGAGCTCTGA GAAATACAGG CTTGGTGCAG AGGACCTCCG 
    TTTGGTTCTG AAAATTGACC CAGGGAATAG GCTTGCGAGG AGTATGATCC 
    ATCGCCTGAA CAAGATGGCT GACTAGAGGT GTTTTGCTAG TGCATTGTGT 
    ACAACCACTG TAATCCACCT TGACACGAGA ACTGTGAGTT ATTTTGAATT 
    GATTTACTAT ACTTGTGCCT TTGGGGGAAT AATTTGCCGA TGTGTTGTTA 
    TAAACCGTGG GATTACATCT TTACCTACAG TATATTCTTT TATTTGTATA 
    ATCATATAAT GTATCAAGCT TGCTTTAAGA ATT

    Gene models with high sequence identity

    1. AT3G16760.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 2e-59; Score: 227.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tetratricopeptide repeat 60
    HMMSmart Tetratricopeptide repeat 0.00018
    HMMSmart Tetratricopeptide repeat 2.3
    HMMPanther TPR REPEAT CONTAINING PROTEIN 0.00000000000022
    ProfileScan Tetratricopeptide repeat 8.142
    ProfileScan Tetratricopeptide repeat 6.903
    ProfileScan Tetratricopeptide repeat-containing 13.808
    superfamily TPR-like 7.7e-20
    HMMPfam Tetratricopeptide TPR-1 0.000027
    Gene3D Tetratricopeptide-like helical 1.1e-19

    See the detailed result >

    AT3G16760.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1); Has 16833 Blast hits to 9400 proteins in 880 species: Archae - 41; Bacteria - 5141; Metazoa - 4120; Fungi - 1882; Plants - 1008; Viruses - 50; Other Eukaryotes - 4591 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR