K19711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19711

Determination of introduced cDNA(s)

J023120B17 - Rice Full-length cDNAs - Original: J023120B17

full reading [+] show sequence

GGCAAACCCC AATCCGCCGC CGCGGCGATC GCCATGGCCG CCTCCGCCGC 
TGCTTCCCGC GCGCAACGCC TATCTCGCAT CTTCTCCTCT TCTTCTCCAT 
CCGTGCGACC ACCCAAGCCC GGGCAGGTCA AGGAAGCACC AAAGCCCGCG 
CCGACCAAGA AAGCTCCTGC TCCCGGCGCC GAGGCGAACC CCAACTTGCG 
CCGGAATGCC ATCGACGACA TCATCAAGGG CCTCTTGCGG GAGCGCGACC 
CGGACAAGCT GGTGTCCGGG TTCATCGCCG CCTCGTCCAC GCACCCGCGC 
TTCCGTGCCC GGCACCGCGT GTACGACGTG GCCGTGTCCC GCCTCGCGAC 
CTTCGGCCGC CTGGACGGCG TCGAGGCCAT CATCGACGCG CAGAAGCCCT 
TCCTGGAGAC CTCCAAGGAG GGATTCGCCG CGCGCCTCAT CCGCCTGTAC 
GGCCACGCAT CCATGGCTTC CCACGCCGCT GCGACGTTCC ATGACCTCCC 
CCCGCAGCTT AAGTCTACCA TGACCTTCAA CTCTCTCCTC GCAGCCTACG 
TCGAGGCTGG AGAGTTCGAA GCGCTTGCCG CCGCGTTCAA GGAGATCCCA 
GTCTCCAACC CCTCGGTTGT ACCTAGCGTG TACTCCTATA ACATACTCCT 
TCAAGCGCTA TGCAAGGTGC CCGACCTCTC GGCGGCACTT GATACTATGA 
CACTCATGGA GAAGTCTGGA ATTTCACCCG ATCTGGTCAC TTTCAACACG 
CTATTGAATG GATTCTACAA CCATGGAGAC ATGGATGGCG CTGAGAAAGT 
CTGGGAGATG ATTACGGAGA GGAATATGGT GCCGGATGCA AAGAACTATA 
ATGCAAAGTT GAGGGGCCTT GTTGCGCAAG GGAGGATTGA GGATGCAGTT 
GCAGTGGTTG AAAAAATGGA GAAGGATGGA CCAAAGCCTG ATACAATATC 
CTACAATGAG TTGATTCGAG GGTATTGCAA AGATGGGAGG TTAGAGGAAG 
CCAAGAAGCT GTTTGAAGAT ATGGCAGAAA ATGGTTATGT TGCGAATAGG 
GGGACATATC ATACCCTCAT ACCATGTCTT GTCAAGGCTG GTGAGCTCGA 
TTATGCTCTG AAGTGCTGTC ATGAGATATA TGGTAAGAAC CTTAGAGTGG 
ACTGTTTTGT GCTGCAAGAG GTAGTGACTG CATTGGTCAC GGCATCGAGG 
GTGGAGGATG CCACCAAGAT TGTTGAGCTT GGATGGAACA ACTCCTACCC 
ACGGAGGATC TTGAATATTC CACATGCTAC AGAGAAAAAC AAGGAAGAAT 
CAATTTCAGA AGAGGAAGAG GAGCCTGAAA ATGCTTGACA AGGATGTACC 
TCCATGTGTT CTTCTCTGAT CAGTCTTACC GATGGTTATC ATTTTGCTAT 
AGTATACTAG TCTGCTGTTG CGGACATTGG AAGTATCTCA TATTGTCACA 
AATGAGATGT CCGGTGTGTA TTTGTCTCTA TCGCTATATT CTGGAAAACT 
AGAAACATCT GAGCTATGTT GTTATTCAAG CCTTCCACAG GTGAGCTCAC 
CTATGTAATA AGCTTGTTTG TCCAATACTT CCTTCATTCC AAAATATAAG 
GCATAACCAC TTTTTTTTCA TTGTTTCATA ATATATAAGG CGTGCAATTA 
ACTAGCATAT GTCCCTCCCC TTTAATTTTT TTTTTTAATC CTCTACCGTC 
AAGATCTCTA ATCTCATTGG ATGCATGCAT AGTATTTATT GGAGTGGTTC 
AAATAAGAAG ATGATAATAT TTTTTTC

Gene models with high sequence identity

AT1G55890.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
E-value: 5e-52; Score: 202.00

InterPro Scan Digest

Program	Description	E-value
superfamily	TPR-like	1.9e-17
HMMTigr	Pentatricopeptide repeat	0.024
HMMTigr	Pentatricopeptide repeat	2.2e-06
HMMTigr	Pentatricopeptide repeat	1.3e-07
HMMTigr	Pentatricopeptide repeat	0.00017
HMMTigr	Pentatricopeptide repeat	3.8e-10
HMMTigr	Pentatricopeptide repeat	0.0014
ProfileScan	Pentatricopeptide repeat	10.72
ProfileScan	Pentatricopeptide repeat	7.552
ProfileScan	Pentatricopeptide repeat	11.488
ProfileScan	Pentatricopeptide repeat	10.797
ProfileScan	Pentatricopeptide repeat	14.02
ProfileScan	Pentatricopeptide repeat	7.925
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	7.9e-75
HMMPfam	Pentatricopeptide repeat	0.75
HMMPfam	Pentatricopeptide repeat	0.047
HMMPfam	Pentatricopeptide repeat	1.9e-05
HMMPfam	Pentatricopeptide repeat	0.11
HMMPfam	Pentatricopeptide repeat	1.2e-09
HMMPfam	Pentatricopeptide repeat	0.19

See the detailed result >

AT1G55890.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
Link: InterPro Scan - TAIR