K19717

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19717

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19717

Determination of introduced cDNA(s)

  • J023122J02 - Rice Full-length cDNAs - Original: J023122J02

    full reading [+] show sequence

    Nucleotide sequence: J023122J02 - full reading 
    GGGTTGGAGT CGCCGCTGTT CCTCCCCTCG CCTCGCAGCC TCCGCCTCTC 
    CTCGTCTTTC CGGCTCAATC TGCGGAGAGG GTGGAGGCGC GCGCGGGCCA 
    CTGCCACCGT GAGGCAGCCG CACTCGGGCA CCGGGACCTC GGGAACCCTA 
    GCCGGCTGGC CCCGGTTTAT TGCCTGCCCC TTCTGGCTGC TAGCGGCCGG 
    GCTGCTTGAC GATTTGTGGG TTTCCCTTTC CCATTTGCTC AGACACTAAA 
    TCATCAAATA GAGGAAGCAA TTTAGTGCCA CGGTGGTCAA GATGGCTGGG 
    CAGTCTGACC CTCATCTTTC TATCTTCTCA CCCTCAGAGG TGGAGTTCGT 
    GGCGGAGGAT GAGATTGTCG AGATCGTCCC TAACATTCGC ATGGAGGCCC 
    TCAACATGAT ATGCGGGGAT TTTGGGCCCT TCTTCCCGCA AATTGCAAGC 
    AAAGTGCCTC TTTGGCTCGC GGTTGCACTC AAGAAGCGTG GCAAATGTAC 
    CATACGCACA CCTGACTGGA TGACTGTTGA CCGCTTGACG CAGGTATTAG 
    ATGCAGAAAG AGAGTCACCC AAAGAATTTC AGCCATTGCC GTTCCACTAT 
    ATTGAAATAT CTAAGCTTCT CTTTGATCAT GCTCGTGATG ACATCTCAGA 
    TGCATACCTG GTAAGATCTT TGATTGAGGA CATCCGAGAT GTCAGATTCC 
    ATAAGGTTGA GACTGGTCTG GAGACAATAT CTGGCCGTAC TCATGCTGTA 
    AAGCTAAAAA ATCTCTCTGC AATGGAAGTG AATATCGTGC GTCCTTTCAT 
    GGTGAGAACT TTACAAGCAT TCTATAAGCA TGATAGCCCA CAGATGATTC 
    AGCAGGCAGA TAACACAGGT AGCAGACCAA CACCAGTTAC AGACCGTGGT 
    CCAAGAAGAG ATCTAAGGCG CAGGTAACAA GCAGGATGTG TATCTATCCC 
    TTGAAAATTT TACTGTGTGT AGATTGCAGT AAATGAAGGT ACTTGTGATC 
    TGTATCTCAC TAGCTAGAAG CCAACTGCGT TTCCCCAATT TGTTGTGTGT 
    GTACCAAAAT TTTATAGGAC TAATAACATT TGACATGGTT TTGTTTTTGA 
    AGAAGCGAAG ATAGTAAGAT ACATCAATTA TCTGTCACAA AAGGGAGATT 
    CCTCATGTAT TCTGGATGGA TGTAACTTAT GTGATGTATT TTTACTATTT 
    CTGGCATAAC CTAAATTTCC TGACTTTATT C

    Gene models with high sequence identity

    1. AT3G12530.1 [+] show detail - PSF2
      E-value: 3e-75; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GINS complex 2.8e-23
    HMMPanther GINS complex, subunit Psf2 4.2e-56
    HMMPIR GINS complex, subunit Psf2, subgroup 1.4e-113

    See the detailed result >

    AT3G12530.1

    Model type
    Protein coding
    Short Description
    PSF2
    Computational Description
    PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 396 Blast hits to 382 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 167; Plants - 52; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR