K19726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19726

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19726

Determination of introduced cDNA(s)

  • J033072C14 - Rice Full-length cDNAs - Original: J033072C14

    full reading [+] show sequence

    Nucleotide sequence: J033072C14 - full reading 
    GATCAGCTCA CCTCTTCATC CTCCTGCACG CGAGAATGGC CATGGCGACG 
    CCAATGGCTC CCCGCTCCAC GTTCGCCATC TTCCTCATCC TCCTGCTCCG 
    TTCCGGCCAC TCTCCGGCGG CCGCGTTCTA TCTCCCGGGC AGCTACCCGC 
    ACCGCTACCG CCCCGGCGAG GCGCTGGCCG CGAAGGTGAA CTCCCTCACC 
    TCGCCGTCGT CCAAGCTCCT CTTCCCCTAC TACTCCCTCC CGTTCTGCGC 
    GCCGCAGGGC GGCGTCAACA GCGCCGCCGA GAGCCTCGGC GAGCTCCTCC 
    TCGGCGACCG CATCGAGACC TCGCCGTACC GCTTCTCCAT GCTCAAGAAT 
    GCCACCGCCT TCCTCTGCCG CACCGACCCG CTTCCCCCCG CCACCGCCGA 
    CCTCCTCATG TTCCGCATCG ACGACGCCTA CCACGTCAAC CTCCTCCTCG 
    ACACGCTCCC CGTCGTCCGG TATGTCAAGA ACATGGCCGC GCCAGGGGTG 
    TTCGTCCGGT CTACCGGCTT CCCCGTCGGC GTGCGCGCCG ACGACGGCGA 
    GTACTACGTG TACAACCACC TCAAGCTCAC CGTGCTGGTC AACAAGCCGC 
    GGAACGGCAC CACCAGGGCG GAGGCCCTGA TGGCGACCGC CGACGCCGTC 
    GAGCTCATCA GCTTCGCCGG CGGGAGCAAG GACGGCGGCG GGTACACCGT 
    CGTCGGGTTC GAGGTCGTTC CGTGCAGCGT GGAGCACGAT GCGGCGGCGA 
    TCAAGGGCAA GAAGATGTAC GACGAGCTGC CGGCGAGGGC GGCCGCCGGG 
    TGCGACCCTT CGGTGGTCGG CATGCGCGTG CGGGCCAACC GGCCGCTCGT 
    CTTCTCCTAC GAGGTGGCGT TCGTGGAGAG CGGCGTCGAG TGGCCGTCGC 
    GGTGGGACGC GTACCTGGAG ATGGGCGGCG CCAAGGTGCA CTGGTTCTCC 
    ATCCTCAACT CCATCGTGGT GGTGGCGTTC CTCGCCGCCA TCCTGCTCGT 
    CATCCTGCTG CGCACCGTGC GGCGCGACCT CGCGCAGTAC GACGAGCACG 
    GCGGCGAGGC GGGGTTGGCG CCGCAGGCGG ACGAGCTCGC CGGGTGGAAG 
    CTCGTCGCCG GGGACGTGTT CCGGGAGCCC GCCCACCATC CTCTTCGCGG 
    CGCTCGGGTT CATGTCGCCG GCGTCGCGCG GCGCGCTCGT GACGGGCATG 
    CTCGGCATCT ACCTCCTCCT CGGCTTCGCG GCGGGGTACG CCGCCGTGCG 
    GCTCTGGAAG ACGGTGCGGC ACGGGGACAG CGCCGGGTGG AAGCGCGTGG 
    CGTGGCGCGC CTCCTGCGCC TTCCCCGGCG CGGGCTTCGC CGTCTTCACC 
    GCGCTCAACT GCGTGCTCTG GTACAACGGC AGCACGGGCG CCGTGCCGTT 
    CCTGCTCTTC GCCGTGATCC TCCTCCTCTG GGCGTTCGTC TCCGTGCCGC 
    TCACCCTCGC CGGCGGGCTG GTGGCATCCC GCGTCGGGCA CCTCGAGTAC 
    CCGGTGAAGA CGAACAAGAT CGCGAGGCAG GTGCCGGCGG CGCAGTGCTC 
    GCCGTGGGTG TTCGTGGCGG TGGCGGGGAC GCTGCCGTTC GGGACGCTGT 
    TCATCGAGCT GCTGTTCATC ATGTCGAGCC TGTGGCTGGG GAGGGTGTAC 
    TACGTGTTCG GGTTCCTGCT GGTGGTGATG GCGCTGCTGG TGGCCGTGTG 
    CGGCGAGGTG TCGGTGGTGC TCACCTACAT GGGGCTCTGC GTGGAGGACT 
    GGAGGTGGTG GTGGCGCGCC TTCTTCGCCT CGGGCTCCGT CGCGGCCTAC 
    ACCCTCGGCT ACGCCGTCTA CTACCTCGTC TTCGACCTGC ACAGCCTCAG 
    CGGCCCGGTC TCCGCCGCGC TCTACGTCGG CTACTCGCTG CTCATGGCGC 
    TCGCCGTCAT GCTCGCCACC GGCGCCGTCG GGCTCGCCGC CTCCTTCGCC 
    TTCGTCTACT ACCTCTTCTC CGCCGTCAAG CTCGACTGAT CCATGGCGTC 
    ATCGTCCGCA CTGTCCACGT CATTTCATTA TGTAGGTGAT CTATGCGTTT 
    TATTACTACA TGATAATAAG ATTATTATTT TTTGTTCCTC GTTTTGGTGT 
    TTTCCATTTT GTACTTCATG AGTATACACC GTAGTAGTAC TAGATAGAAA 
    CGAGTTTGAG TTTGGTTTAA AGGAGCACTA TTACAAGATT TCACTTTGTA 
    TTT

    Gene models with high sequence identity

    1. AT5G35160.2 [+] show detail - Endomembrane protein 70 protein family
      E-value: 0; Score: 310.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nonaspanin (TM9SF) 1.2e-80
    HMMPfam Nonaspanin (TM9SF) 1.3e-56
    Coil coiled-coil 0
    HMMPanther ENDOSOMAL PROTEIN-RELATED 1.9e-125
    HMMPanther Nonaspanin (TM9SF) 1.9e-125
    HMMPanther ENDOSOMAL PROTEIN-RELATED 7.5e-150
    HMMPanther Nonaspanin (TM9SF) 7.5e-150

    See the detailed result >

    AT5G35160.2

    Model type
    Protein coding
    Short Description
    Endomembrane protein 70 protein family
    Computational Description
    Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT4G12650.1).
    Link
    InterPro Scan - TAIR