K19810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19810

Determination of introduced cDNA(s)

J023100A14 - Rice Full-length cDNAs - Original: J023100A14

full reading [+] show sequence

GAGAGTCCAC AGCAGGCGCC GCGCGCGCTA TCGATCTCCG CCGCCTGACC 
GCCGTACCAC CGTCTCCCGG CAGCTAGCGT CGACCGGCGT CATGTCGTCA 
CGGCGAAGCA TGGGAGCCCT GGCCGCTGTC TGCGTCTGCA TGTTCGTCTT 
CGTCTCCTCC GCACGGGCAG AAGATCCGTA TAGATTTTTC GATTGGGAGG 
TTACTACTGG GAACATCAAT CCTCTCGGCG TCCAGCAGCA GGGTATTCTG 
ATCAATGGGC AATTTCCGGG GCCGGAGATT GACTGCCAGA CGAATGATAA 
CTTGATCGTC AACGTGCACA ACCGTTTGTC GGAGCCGTTT CTTCTGTCAT 
GGAACGGGCT TCAGCACAGG AAGAACTCGT GGCAGGACGG CGTGTCCGGC 
ACGAACTGCC CGATCCCGCC GGGCCAGAAC TTCACCTACC AAATGCAGGC 
CAAGGACCAG ATCGGCAGCT TCTTCTACTT CCCGTCGCTC GCCTTCCACA 
AGGCCGCCGG CGGCTTTGGC GCCATCCGCA TCCGCAGCCG CCCGCTGATC 
CCCGTCCCCT TCGATCCGCC GGCCGGCGAG TACACCATGC TGATCGGCGA 
CTGGTACAAG ACCAGCCACA AGGCTCTGCA AGCCATGCTG GACAGTGGAA 
AGCAGCTGCC TTCCCCTGAT GGCATCCTGA TTAACGGCAA AGGTCCAAAT 
GGCGCAAGCT TCACCGTTGA GCAAGGGAAG ACGTACAGAT TGCGCGTCTC 
CAACGTCGGC CTGCAGAGCA CGCTCAATTT GAGGATCCAA GACCACAACA 
TGACGCTGGT CGAGGTGGAG GGCACGCACA CGGTGCAGAA CACCTACAGC 
TCCCTCTACG TCCACGCCGG CCAGTCGCTG TCCGTGCTGT TCACGGCCAA 
CCGCCCGCCC GGCGTCTACC AAATCACCGT CTCCACCCGC TTCGCCAAGC 
GTGCACTCAA CTCGTCCGCC GTCCTGCGCT ACGCCGGCTC GAGCGCCACC 
ATCTCCTCAC CGCCGCCACC GGCTGGCCTC GCCGACGACA TCGACTTCTC 
GCTCGACCAG GCTCGCTCCA TCAGGACGAA CCTGACGGCG AGCGGGCCAC 
GGCCGAACCC GCAGGGCTCG TACCACTACG GCTCGATCAA CGTGACACGC 
ACAATCCGGC TCGCCAACTC GGCGGGGCGC GTCGCCGGCA AGCAGCGGTA 
CGCCGTGAAC GGCGTGTCGT TCGTGGAGGC CGACACGCCG CTCAAGCTGG 
CCGACTACTA CAGGATCAGC GACGTGTTCC GGCTCGGCGG CATCCCGGAC 
GCGCCGCCCG CGGGCGCCGC GGCGGCTCCG CGGAGCGAGG CGGCCGTGAT 
GGACTCCGAC TACCGGTCAT TCCTCGAGAT CGTGTTCGAG AACAGCGAGG 
ACAGCGTCCA GATCTGGCAC CTCGACGGCT ACAGCTTGTT CGTAGTTGGG 
ATGGACAGGG GAGTGTGGAG CGAGCAGAGC AGGAAGAGCT ACAACCTCGT 
CGACGCAGTC TCCCGGTGCA CGGTTCAGGT GTACCCGAGG GCGTGGACGG 
CGGTGTTGGT GGCGCTGGAC AATGTGGGGA TGTGGAACCT CAGGTCGGAG 
GACTGGGCGC GCAGGTATCA GGGCCAGCAG TTCTACCTCC GCGTGTACAC 
GCCGTCGCAC TCGTTCCGCG ACGAGCTCCC CATCCCGAGC AACGCGCTCC 
GCTGCGGCCG CGCCACCAAC GCGAGCGGCA GAAGCCGAAC CCTGTCGCGG 
TACTAGTTGA CAAACCGGCT GGTGCTTGTC AACGACCCTA ACACAACACC 
AGGAGTTACT CGGCCATGAC AAGTTTTGGC CAGGTATATA TACCGTATAC 
GCAAATGCAT CAAAGTTTTA CTCGGCCATA TCACAAGTTT GGCTGGTTGG 
GTTTATTTAG CGTGAGTTCA GTTTGTAAGG CGTAAATGAA CTCCATATAA 
ACAAGGGGTG GGACCAAAGT GTAGCCT

Gene models with high sequence identity

AT1G76160.1 [+] show detail - SKU5 similar 5
E-value: 0; Score: 699.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Multicopper oxidase, type 3	4.5e-38
HMMPfam	Multicopper oxidase, type 1	2.8e-38
HMMPfam	Multicopper oxidase, type 2	2e-21
HMMPanther	PECTINESTERASE	6e-291
HMMPanther	MULTI-COPPER OXIDASE	6e-291
Gene3D	Cupredoxin	2.6e-36
Gene3D	Cupredoxin	3.9e-42
Gene3D	Cupredoxin	1.6e-48
superfamily	Cupredoxin	5.2e-44
superfamily	Cupredoxin	3e-41
superfamily	Cupredoxin	3.3e-31

See the detailed result >

AT1G76160.1

Model type: Protein coding
Short Description: SKU5 similar 5
Computational Description: SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link: InterPro Scan - TAIR