K19812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19812

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19812

Determination of introduced cDNA(s)

  • J013110N20 - Rice Full-length cDNAs - Original: J013110N20

    full reading [+] show sequence

    Nucleotide sequence: J013110N20 - full reading 
    GAGTAGTGTG AGGAGAAGAT GGAGTTTCTG TCATCAGTTT CATATCTTTT 
    CAAGGCTCTC TGCACATGTG GTGTTGCATT TGTCACTGGG TGGTTTGCTC 
    ACTGGGTGTA CAGATGGATG AATCCCCAAT GCGATGGGAA GCTCCCTCCT 
    GGCTCCATGG GCTTGCCTCT TGTTGGTGAG ACATTCCGCT TCTTTAGAGC 
    GAGCGCATCT ATTGACATGC CGAGCTACTA CAAGGAAAGG CTCAAGAGAT 
    ATGGGCCAAT CTTCAAGACA AGCCTAGTGG GGCAGCCTCT GGTCATTTCC 
    CTCGATCCAG AGGTGAACCG GTTCGTGTTC CAGCAGGAGG GCAAGCTGTT 
    CCGTAGCTGG TACCCAGAGA CGACGAACAC CATCTTTGGC AAGAAAAGCC 
    TCACCACGTA TAGTGGTGCC GTTAATAAGT TCGTCCGGAG TTTCGCGTCC 
    AAGCTCTTTG GCCCTACAAA CTTGAAAGAA TCACTCCTTC CTGAACTGGA 
    GAGCGCCGTG AGGGAGAGCT TCGCGACGTG GGTCATGAAC CCCAGCATTG 
    AGGTGAAGGA CGGCATATCG AATATGATAT TTGATCTGGT CGCTAAGAAG 
    TTGATTGGCT TCAACCCCAC CAAGTCAAGA GAATTGAGGA AAAACTTTCA 
    GGAGTTCTTC CAGGGAATGG TCTCTTTCCC CATATATTTT CCAGGGACAT 
    CATTTTACCG ATGCATGCAG GTATATTTGT GTCCAAGTAG CTCAATGAGG 
    AACCAATTTT TTGACTTTAT CAGAGAAAAC TAGATACTTC TCGAAATACT 
    AATTAGGAGC TGACCCTTTA CCTATGAAAA ATGTTCTGAT TTTGTCGCCT 
    CGACCTTCTG ATGCTTTTCT TTGTAGGGCA GGAGAAACGT GCATAAAACA 
    CTGACTGATT TATTAAAAGA GAGGCTAAGT GCACCTGGGG AAAAATATAA 
    TGATCTTATT GACCAAATTA TTGAAGAACT ACAGAGTGAA AATCCGGTGA 
    TAGATGTCAA TTTTGCTGTA GATGTACTTT CTGCACTCTT ATTTGCCAGT 
    TTTGCAACAC TATCATCGAC CTTGTCTGTC GGTTTTAAGT TTCTCACCGA 
    CAATCCAAAA GTTGTCAAGG AGCTTAAGGT TTGTCCTTTG TACTCAACAA 
    ACATTATATT GTTTTTTAAA ACTAGACTAC CTGCTTGTTT CATTAGGAAA 
    GTTACAGCAG GAGAGGCACT TACAGGCACC TGCTTGTTTT GAAAGCATAC 
    CAAATTCTAC AATCATAATC AAATCAATAA CCTAAACTAC AAATCAGCTA 
    CCCAAAGAAA ATATATCTGA AACATTACAA GTCAAACATT TAAAATCTCA 
    ATTGTATGTA AGAAACATAG GTTCCAAGGT TAAAATCTTT GAGGTACTAC 
    ACTTTTTTTT TTGTTAAATT CTGTTACTTT CAGTATATCT TCGATGTACC 
    TCACCTTTTA CCGCAAACAC CTAAAAGGTG AGGTACCTCC CAATAGCTAT 
    AAAAAATCTC TTGAACAGTT TATGTCAATC CTGAGGAAAA ACATTTTTGC 
    TTTGGTTGCA CACATCCGTC TTCACGTTAG TGTGCCAAAA GCTTAACTTG 
    ACAGTGAAAG AGTAGCCATT AATTTACGCG TCAATAATTA TGTCATTCCA 
    GGAGGAGCAT ACAACGATCC TGAACAAACG AGGCAGTCTG AATTCTGGGT 
    TCACTTGGGA AGAGTACAAA TCCTTGATGT TCACTTCACA GGTTGTCCAC 
    GAAATTACTC GAATTAGTAA CGTTGCACCT GGAATTTTCA GGAAAACCCT 
    AGCAGATGTG AAAGTGAAAG GCTATACAAT CCCAGCTGGG TGGCTAGTCA 
    TGATTAGCCC CATGGCAGTT GATCTAAACC CAACATTGTT TGAAGACCCA 
    CTCGAATTCA ATCCATGGAG GTGGACGGAC AAGACAAAGC AGAGTGAGCT 
    ACTAAGGAAT TACATGCCAT TTGGAGGAGG CATAAGACTC TGTCTCGGGG 
    CAGAGTTTAG CAAGCTTTTT ATTGCCCTTT TCATCCACGT CTTGGTGACT 
    GAGTACAGAT GGAAAGAGAT CAAAGGAGGT GATGTACTGC GCATCTCAGA 
    GGTTATATTC CCACAAGGCT ATCATATCCA ACTTATCCCT CATACCTAAT 
    TAAAATTGTG TCAAGGGAAT TGTACCCAAC ACTTTCTTGT GAGCAATGTA 
    AAGCGTTATG ATTGGGTACA GTCAGTGAGT TTCTGTGAAT GCATTTGTGT 
    AATAAGCAAG ATCAGCGACA TAACAGAGTT GCTAGGGTCG GATTACATCC 
    TTACCACAAC ATCGACTCTG AGCACCCGGC TACCTATGAG TACTACCTTC 
    ATTTTATTTG G

    Gene models with high sequence identity

    1. AT1G12740.1 [+] show detail - cytochrome P450, family 87, subfamily A, polypeptide 2
      E-value: 8e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYTOCHROME P450 PLANT 6.5e-88
    HMMPanther Cytochrome P450 6.5e-88
    HMMPanther CYTOCHROME P450 PLANT 9.2e-77
    HMMPanther Cytochrome P450 9.2e-77
    HMMPanther CYTOCHROME P450 PLANT 6.1e-22
    HMMPanther Cytochrome P450 6.1e-22
    HMMPfam Cytochrome P450 0.0000000011
    HMMPfam Cytochrome P450 0.000013
    HMMPfam Cytochrome P450 2.4e-36
    PatternScan Cytochrome P450, conserved site 0
    Gene3D Cytochrome P450 8.7e-22
    Gene3D Cytochrome P450 0.000053
    Gene3D Cytochrome P450 9.1e-36
    superfamily Cytochrome P450 1.4e-26
    superfamily Cytochrome P450 0.000000014
    superfamily Cytochrome P450 2.3e-41
    FPrintScan Cytochrome P450, E-class, group IV 0.000000000000084
    FPrintScan Cytochrome P450, E-class, group IV 0.000000000000084
    FPrintScan Cytochrome P450, E-class, group IV 0.000000000000084
    FPrintScan Cytochrome P450, E-class, group IV 0.000000000000084
    FPrintScan Cytochrome P450, E-class, group IV 0.000000000000084

    See the detailed result >

    AT1G12740.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 87, subfamily A, polypeptide 2
    Curator Summary
    encodes a protein with cytochrome P450 domain
    Computational Description
    "cytochrome P450, family 87, subfamily A, polypeptide 2" (CYP87A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 3 (TAIR:AT1G78490.1); Has 31076 Blast hits to 30988 proteins in 1655 species: Archae - 56; Bacteria - 5533; Metazoa - 10873; Fungi - 5392; Plants - 7791; Viruses - 3; Other Eukaryotes - 1428 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR