K19815

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19815

Determination of introduced cDNA(s)

  • J013071K12 - Rice Full-length cDNAs - Original: J013071K12

    full reading [+] show sequence

    Nucleotide sequence: J013071K12 - full reading 
    GAAAGTTGTT CTCCGCTTAT CCTCTTCCTC TTCTTCTTCC TCAAACCCGC 
    AAAACCCCAA GCCCCGAGCT CACACACCAC CACCACCGCC ATCGCCATGG 
    CGCCACCTGC CATGGCCTTC CAAGCTCTCG CTCTCGGCCC CCTCCCCCTC 
    CCCCTCCCCG CGGCGCGTCG CCGCCGCCGC GTGCGAGTCC TCGCCGTGGC 
    CGCAGACCAC ACCCCGCCGC CGCCGCCGTC GCCGTCCTCC CCTCCCGAGC 
    CGGCGAACAG CCCGAGCCGG CTCCTCCGTG AGCTCGCGGA GCGGAAGAAG 
    GCCGTGTCCC CGAAGAAGAA GCACCCGCCG CGGCGCTTCA TCCTGAAGCC 
    GCCGCTCGAC GACGAGCGCC TCACCCAGCG GTTCCTCAGC AGCCCGCAGC 
    TGTCGCTCAA GGCGCTCCCG CTGCTATCCT CCTGCCTCCC GTCGGCGCCG 
    CTCTCCGCCG CAGACCGGAC ATGGATGGAC GAGTACCTCC TCGAGGCCAA 
    GCAGGCGCTG GGCTACCCGC TCGCCCCCTC CGAGACGCTC GGGGACGGCG 
    ACGACGACGG CTGCCCCGCG CGGCACTTCG ACGTGCTGCT CTACCTCGCG 
    TTCCAGCACC TGGACACGTC CTGCGAGCGC ACGCGGACGC GGCACGTCCG 
    GAGTGGCCAC TCCAGGCTCT GGTTCCTGGG CCAGTACGTC CTGGAGCTCG 
    CGTTCTGCGA GTTCTTCCTG CAGAGGTACC CCCGGGAATC CCCCGGGCCG 
    ATGCGGGAGC GGGTGTTCGC GCTGATCGGG AAGAGAGCGA TTCCCAAGTG 
    GATCAAGGCA GCTAGCCTTC ACAATTTGGT GTTCCCTTAT GACGATTTGG 
    ATAAGATGAT TCGGAAGGAC CGGGAGCCAC CAGCAAAGGC TGTATTCTGG 
    GCACTGTTTG GAGCTATATA TTTGTGCTTT GGAATGCCTG AAGTCTACCG 
    TGTTCTTTTT GAGGCGTTTG GCATGGACCC TGAAGATGAG AGCTGCCAGC 
    CAAAGCTGCG GCGCCAACTA GAAGATGTTG ACTATGTATC AGTGGAGTTT 
    GAAAAGAGAC AACTCACATG GCAAGATGTT GCTGCCTATC GGCCACCACC 
    AGATGCCCTC TTTGCTCACC CTAGGCTATT TCGAGCATGC GTGCCACCAG 
    GCATGCATCG TTTCAGAGGA AATATTTGGG ATTTTGACAA TAGACCCAAG 
    GTCATGAACA CACTGGGATA TCCATTGCCT ATGAATGATA GAATTCCAGA 
    AATCACAGAA GCAAGGAACA TAGAGCTTGG ACTTGGTCTT CAGTTGTGCT 
    TCTTGCATCC CTCAAAGCAT AAGTTTGAGC ATCCAAGATT TTGTTTAGAA 
    CGCCTGGAGT ATGTTGGACA GAAAATTCAG GATCTAGTGA TGGCGGAGAG 
    GCTGCTCATG AAGCATCTCG ATGCACCCGG TAGGTGGTTG GCAGAGAAGC 
    ATCGGAGGTT GCTAATGAAC AAATACTGCG GACGATACCT CCGGGACAAG 
    CACCTGCACC ACTACATTAT CTACGGGGAG TCGGTGCAAG ACAGATTTGA 
    ACACAACCGC CGGCTGAGAA ATCCTTCCAC GACCGCCGTC CAGCAAGCAA 
    TACACGGCCT TGCTTACTGC GTCTATGGCA AACCGGATGT AAGGCGATTG 
    ATGTTCGAGG TGTTTGACTT CGAACAGGTC CAGCCAAAAG CAGTATGAGG 
    GTGGTCACAA AACCTGTGCT TGTGCTGAGC TGCTGATACG CTGACATTAC 
    CGGCGTTTGA AAGCTGAAAT GCTTCAGTGT TGTGACCTGT GAACAGATCC 
    AAGCGCAGAC AGTTCTGAGT CTGATCCCCG AAGTCGAAAA GCAGGTTAAC 
    ACACGTAACT CATGCACCCT CGTTTCTACG AGATGAACTG GATTAGAGAT 
    GTTGTAAATC GAACGCTGTT GTTTTCTGAA TTTACAGTTT TGACGATTTG 
    ATGTAAATTT CCATTTGAGC AGAAAATGCA AGCAGCATCA GAGACAAAAA 
    ACAGCATAGG AAGAATTTTT CCTGTGAAAC ATGCTTGTAA AGGAGTTTGT 
    AATAGATCTG CAGAACATCT TTGCAACCAA TGATACAAGC AGCTTCATCT 
    TTT

    Gene models with high sequence identity

    1. AT4G37510.1 [+] show detail - Ribonuclease III family protein
      E-value: 0; Score: 776.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribonuclease III 3.4e-24
    superfamily Ribonuclease III 2.4e-17
    HMMSmart Ribonuclease III 1.9e-21
    Gene3D Ribonuclease III 0.000000000000024
    Gene3D Ribonuclease III 0.00014
    ProfileScan Ribonuclease III 13.299

    See the detailed result >

    AT4G37510.1

    Model type
    Protein coding
    Short Description
    Ribonuclease III family protein
    Computational Description
    Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48121.2); Has 794 Blast hits to 789 proteins in 319 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 39; Plants - 42; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR