K19820

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19820

Determination of introduced cDNA(s)

  • J033043K18 - Rice Full-length cDNAs - Original: J033043K18

    full reading [+] show sequence

    Nucleotide sequence: J033043K18 - full reading 
    GATTCCGTCT CTTGCTCTCA AGCGGCGTGC AACCATGGCG GCCACGGCCT 
    CCTCCTTCCT CGCCCGCCGC CTCCTCCTCA CCCGCCGCGT CCTTTCCTCC 
    CCCCTCCGCC CCTTCTCCAC CACTGACTCC TCCTCATCCT CCTCCTCCTC 
    CTCTTCCTCC GACGACTCCC GTGCGGGATC TGATGCGGGA CCCGACCCCG 
    AGCAGCAGCA ACCGCCACCA GCGGGCCAGG ATCAGCAGGC CGCCGCCCGG 
    CCGCGCGCCG GCGACACCCG TCCCCTCGAG AACGGCCTTG ACCCCGGAAT 
    CTACAAGGCG ATAATGGTGG GGAAGGTGGG GCAGGAGCCG ATACAGAAGC 
    GGCTGAGGAG CGGGAGAACG GTCGTGCTGT TCTCGCTCGG CACCGGCGGC 
    ATCCGCAACA ACCGCCGCCC GCTGGACCGC GAGGAGCCGC ACCAGTACGC 
    TGAACGATGC TCCGTGCAGT GGCACCGCGT CTGCATCTAC CCGGAACGGC 
    TCGGCAGCCT CGCGCTCAAG CACGTCAAGA CCGGTTCTGT TCTTTATCTG 
    GAAGGGAATC TTGAGACGAA AGTGTTTTCT GATCCTATAA CTGGACTGGT 
    TCGGCGCATA AGAGAAATAG CTGTGCGCTC AAATGGCCGT CTCTTGTTTC 
    TTGGGAATGA TTGTAATGCG CCCAAGTTAG GTGAAGCCAA GGGCGTTGGC 
    TACTTCTGAA ACTGAGGTCC ACTCGACATC AAGGTATATC AGTTGATAAA 
    ATTGATTTAA ATTAGAGGTA TCTCAACTGT GCTTAGCTTT AAGCGTTCAA 
    CGTATGGTGA AGATCTCAGT AGTGGACCAG CTTTATGGAA CAAATACAGT 
    TGGACATCAT TGTCGAAACC CTCTAATAAT TGAACAACTG ATTGTACTGT 
    ATAACTTGAT TTTGACG

    Gene models with high sequence identity

    1. AT3G18580.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 8e-56; Score: 214.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Primosome PriB/single-strand DNA-binding 3.6e-15
    superfamily Nucleic acid-binding, OB-fold-like 4.6e-19
    Gene3D Nucleic acid-binding, OB-fold 1.2e-17
    FPrintScan PRICHEXTENSN 4.1e-09
    FPrintScan PRICHEXTENSN 4.1e-09
    FPrintScan PRICHEXTENSN 4.1e-09
    FPrintScan PRICHEXTENSN 4.1e-09
    ProfileScan Primosome PriB/single-strand DNA-binding 14.011

    See the detailed result >

    AT3G18580.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: mitochondrially targeted single-stranded DNA binding protein (TAIR:AT4G11060.1); Has 3646 Blast hits to 3646 proteins in 1001 species: Archae - 0; Bacteria - 2307; Metazoa - 115; Fungi - 0; Plants - 68; Viruses - 24; Other Eukaryotes - 1132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR