K19826

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19826

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19826

Determination of introduced cDNA(s)

  • J033069K09 - Rice Full-length cDNAs - Original: J033069K09

    full reading [+] show sequence

    Nucleotide sequence: J033069K09 - full reading 
    GGGCCCGCTC CCACGCTGTG TCACACCCAC CTGCCACCTC GCCGCGACGA 
    CCCCCTCGCC GCCGGCCGCC ACCGCGCGTC AACTGCCGGC GATGCCGCCC 
    CCTTCCCTCC TGCTCCTCCA TCCACGCACG CCGCTGCCGC ACCACCACCG 
    CTCCTCCTTC CGGACGAGCT CTCCGCGGCC ATCCAGGATG GTCTGCGCCG 
    CTGCCGAGGG GTTTATCTCC GCGGCGCCGA TCCTCCTCCC CGACGGCCCG 
    TGGAAGCAGG TGGAAGGCGG CGTCACGGCG GCGAAGGGGT TCAAGGCGGC 
    GGGTATCTAC GGCGGTCTGC GCGCCAAGGG CGAGAAGCCC GACCTTGCGC 
    TGGTCGCCTG CGACGTCGAC GCCACTGTCG CGGGAGCTTT TACTACGAAT 
    GTTGTTGCTG CTGCACCAGT TTTGTACTGT AAGCGTGTCC TTAATTCATC 
    AAAAACAGCT CGAGCTGTGT TAATTAATGC TGGACAAGCA AATGCAGCAA 
    CAGGTGATGC AGGATATCAG GATACAGTGG ATAGTGCTGA TGCTGTTGCC 
    AAGCTTCTTA ATGTGAGCAC AAATGACATA CTGATCCAGT CCACTGGTGT 
    TATTGGTCAG AGAATAAAGA AGGAGGCACT TGTAAATTCA CTTCATAGAC 
    TTGTGGGCTC ACTGTCTTCA TCCATTGAGG GTGCAAATTC TGCAGCTGTG 
    GCCATTACAA CTACAGACCT TGTTAGCAAG AGCATCGCTG TACAGACAGA 
    GATTGGAGGA GTGCCTATCA AAATAGGAGG AATGGCCAAA GGTTCTGGGA 
    TGATTCATCC AAATATGGCA ACAATGCTTG GTGTTTTAAC AACTGACGCT 
    CAAGTCAGCA GTGATGTTTG GAGAGAAATG GTCCGAACAT CAGTGAGTAG 
    AAGCTTCAAT CAAATAACAG TGGATGGTGA TACGAGTACC AATGACTGTG 
    TTATTGCTCT GGCTAGTGGG TTATCTGGTT TATCCAGTAT CCTTACTCAT 
    GATAGCACTG AAGCTCAACA GTTCCAAGCA TGCTTAGATG CTGTAATGCA 
    AGGTCTTGCA AAATCCATAG CATGGGATGG TGAGGGTGAA CATGTCTAAT 
    TGAGGTTACT GTAGCTGGTG CCAATAATGA GGCTGAAGCA GCTAAAATTG 
    CTCGTTCAGT GGCATCTTCC TCCCTGGTTA AAGCCGCTGT ATTTGGAAGA 
    GACCCAAACT GGGGACGTAT TGCTTGTTCT GTCGGTTATT CAGGCATTCA 
    GTTTGATGCG GACCAGCTTG ATATTTCCCT TGGAGCTATT CCACTAATGA 
    AAAATGGTCA ACCACTCCCA TTTGACAGAT CTGCGGCCAG CAAGTATCTG 
    AAAGATGCTG GAGACATCCA TGGTACAGTG AACATTGATG TATCAGTTGG 
    GAGGGGAGGA GGAAGTGGAA AGGCCTGGGG CTGTGATTTA AGTTATAAGT 
    ATGTCGAGAT AAATGCGGAA TACACGACGT GAAAGTCTTA CACTGTCTAT 
    GAAGAACGGT CTCCGCTTGA TGGAAATGGA ACGCTGTTCG GATGCAGCTA 
    GGCATCTGAG CGATCTGTAT CATATTGAGA CTCGCCCTTT GTTGTATCAA 
    TCGGCTGAAC GTGCATTCTT TTGTAAGTGT AAGGAATGCG CTATACAATG 
    TTACGGCACA ATAAGTAAGC TGTCTGCCAT GCCATCTGAT TCAATTCTAA 
    TTTATAACAG TGACAGGGGA TGTTTGGGCG C

    Gene models with high sequence identity

    1. AT2G37500.1 [+] show detail - arginine biosynthesis protein ArgJ family
      E-value: 2e-158; Score: 170.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Q9ZUR7_ARATH_Q9ZUR7; 6e-44
    BlastProDom Q9ZUR7_ARATH_Q9ZUR7; 3e-98
    HMMPfam Arginine biosynthesis protein ArgJ 9.5e-46
    HMMPfam Arginine biosynthesis protein ArgJ 2.7e-91
    HMMPanther Arginine biosynthesis protein ArgJ 2.3e-101
    HMMPanther Arginine biosynthesis protein ArgJ 1.5e-58
    superfamily Peptidase S58 DmpA/arginine biosynthesis protein ArgJ 1e-36
    superfamily Peptidase S58 DmpA/arginine biosynthesis protein ArgJ 9e-79

    See the detailed result >

    AT2G37500.1

    Model type
    Protein coding
    Short Description
    arginine biosynthesis protein ArgJ family
    Computational Description
    arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 5525 Blast hits to 5515 proteins in 1540 species: Archae - 87; Bacteria - 2817; Metazoa - 2; Fungi - 139; Plants - 50; Viruses - 0; Other Eukaryotes - 2430 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR