K19836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19836

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19836

Determination of introduced cDNA(s)

J023007H17 - Rice Full-length cDNAs - Original: J023007H17

full reading [+] show sequence

GGCCTCCTCC TCCCCTCCCC TCCACTCCGC GAGCCGCCAC CTCCTCCGCC 
GCCGACGACG ACGACGACGC CGCATCCCCA ACCCTAGCCG CCGCTCGGCG 
GTGCTGCGAC GTAGGAGCGG GTCTCCTCTC TGCATGGTCC GTTAGGGCTA 
CCGAGCCGAT CGACCGGCGG GCCTAAAACC CTAGCCGAGA GAGGCTGCGG 
GTTGGGTGGG GGTGGGGGCG TGCTCGACTC TCCGGCGGCG CCATGAAGCT 
GACGGTGAAG ACCCTCAAGG GCACCCAGTT CGAGATCCGG GTGCAGCCCA 
ACGACACCAT TATGGCTGTC AAGAAGATCA TTGAAGAGAT ACAAGGAAAG 
GATAGCTACC CATGGGGCCA ACAGTTGCTG ATTCACAATG GCAAGGTTTT 
GAAAGATGAA AGTACATTGG AAGAGAACAA AGTCAGTGAA GTTGGGTTTT 
TAGTTGTCAT GCTTAGTAAG AGTAAAGCTT CTGGTTCCAG TGGAGCTTTA 
AGTTCACTGA CTTCAAGCAC CCCTTTGACC AGGCAAGAAA CTCCTGCGGA 
TGCTTCACGA GCAGCTCCTC AACCCCTAGT TGCACCTACA AGAACACCCC 
AGCCCGAAAG GCCACCTGCG GTAGCCCCTT CAAACGCATA TGGTCAAGCA 
GCATCAAATC TATTGTCGGG AAGCAATCTT GACACTACGA TTAACCAGCT 
GATGGAAATG GGTGGTGGCA GTTGGGACAG AGATAAAGTC CAAAGAGCTC 
TACGTGCAGC TTATAACAAC CCAGAGCGTG CTGTTGAATA TCTATATTCT 
GGCATTCCAA TTACAGCGGA GGTTGCTGTT CCAGCAGGTG GTCAAGGGGC 
AAACACAACC GAGCCATCTT CTACTAGGGA AGCCAGTCTG TCTGGAATTC 
CAAACGCATC CCCGTTAAAT CTTTTCCCAC AGGGCGATGC AAATGATGGA 
GGTGGTGCTG GTGGTGGAAC ACTTGAGTTC CTTAGACATA ACCAACAGTT 
TCAGGCGCTT CGGGAAATGG TTCATACTAA CCCACAAATA TTGCAGCCTA 
TGCTCCAGGA ACTGAGCAAG AAGAATCCTC AACTTCTGAG GTTGATTCAG 
GAGAACCATG ATGAGTTCCT TCAGTTAATA AATGAGCCCT TTGATGGTGC 
TGATGGGGAC TTCTTAGACC AACCTGACCA GGATGAGATG CCCCATTCTA 
TCAATGTCAC ACCTGAAGAG CAAGAGGCGA TTGGACGGCT TGAAGGCATG 
GGATTTGACA GAGCACGTGT CATCGAAGCA TTCTTCGCCT GTGACAGGAA 
CGAGCAACTC GCAGCAAATT ACCTTCTTGA ACATGCTGCT GATGAAGATT 
AGATGGAATT ATTTAAACCC GCTTATTCTG TACACCTGCC CTGCAATTTA 
TCAGACTTTT GAAGTTTGCG GGTGCTTTGG ATCCAAATTG AACAAGCTGA 
GATGGAGCTA ACACCGCGTT GCATCGATTT ATCTCTTGTA CAATACTTGC 
TTTATTTAAT TGCTGGCTTA GCATTCAAAT ACATGGCTTA ACATTTATTC 
GAGCTGTCTG AGGGACGGAT CCTTTTGTCC ATCCGTTTTT AGCCAGAAAT 
TTCAATGGAT GTGAATTGTG TTGACCACAT TTTCTGTCCT GTTTGTGTTA 
TTCAATTCGT GATTTCTAGA GCAGT

Gene models with high sequence identity

AT1G79650.2 [+] show detail - Rad23 UV excision repair protein family
E-value: 4e-117; Score: 419.00

InterPro Scan Digest

Program	Description	E-value
superfamily	XPC-binding domain	3.9e-22
superfamily	Ubiquitin-like	1.3e-20
superfamily	UBA-like	0.0000000000014
superfamily	UBA-like	0.00000000021
HMMSmart	Ubiquitin	2e-18
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	0.00000063
HMMSmart	Heat shock chaperonin-binding	0.00046
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	0.0000000048
HMMPanther	UV EXCISION REPAIR PROTEIN RAD23	1.3e-137
HMMTigr	UV excision repair protein Rad23	9.9e-153
FPrintScan	UV excision repair protein Rad23, C-terminal	2.3e-30
FPrintScan	UV excision repair protein Rad23, C-terminal	2.3e-30
FPrintScan	UV excision repair protein Rad23, C-terminal	2.3e-30
FPrintScan	UV excision repair protein Rad23, C-terminal	2.3e-30
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	13.053
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	14.764
ProfileScan	Ubiquitin supergroup	18.301
Gene3D	no description	1.6e-21
Gene3D	no description	0.0000000000000072
Gene3D	XPC-binding domain	8.2e-22
Gene3D	no description	3.2e-16
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	0.00000000000018
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	0.000000055
HMMPfam	XPC-binding domain	1.6e-22
HMMPfam	Ubiquitin	0.00000000000044

See the detailed result >

AT1G79650.2

Model type: Protein coding
Short Description: Rad23 UV excision repair protein family
Curator Summary: Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational Description: RAD23; FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G16190.1); Has 8953 Blast hits to 4550 proteins in 626 species: Archae - 0; Bacteria - 45; Metazoa - 4005; Fungi - 1183; Plants - 2293; Viruses - 114; Other Eukaryotes - 1313 (source: NCBI BLink).
Link: InterPro Scan - TAIR