K19847

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19847

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19847

Determination of introduced cDNA(s)

  • J013116N23 - Rice Full-length cDNAs - Original: J013116N23

    full reading [+] show sequence

    Nucleotide sequence: J013116N23 - full reading 
    GTGGCGAGGG AGGAAGGAAG GAAGAAGAGC AGGAGGAGCC CAACGCCCGC 
    GAAACCCTAG CCCTCGCGCT CGCCCACCGC CTTCCTCTCC CCCCCTACCC 
    TACCCCGAGC TCGCCACCCG ATCCGATCGA AGATGCATAA GCTGGGGAGA 
    GGAAGCCGCG ACAAGGTGCA GCAGTTCATG ACCATAACTG GTGCGAGTGA 
    GAAGGTCGCC CTTCAGGCCC TGAAAGCTAG TGATTGGCAC TTGGAAGGAG 
    CTTTTGATTT TTTCTACAGC CAACCACAAA TTTCTCTGAC GAACTCTCGG 
    CATCTTGAAG ATCTGTACAA CAGATACAAA GAACCTGATG TTGATATGAT 
    CATGGTGGAA GGTGTATCTC AGTTTTGCAC TGATCTTCAG GTGGATCCCC 
    AGGATATTGT TATGCTTGTC ATATCATGGC ACATGAAAGC TGCCACAATG 
    TGTGAATTTA CTCGCCAGGA ATTCATTGGT GGACTGCAGT CAATTGGGGT 
    GGATTCAATT GAAAAGCTCC GTGAGAAATT GCCATCTTTA CGGGCTGAGA 
    TAAAAGATGA CCATAAATTC CGTGAGATAT ACAACTTTGC TTTTGCTTGG 
    GCTAGGGAAA AGGGTCAAAA ATCTCTCGCA CTGGAGACTG CTCTTGGAAT 
    GTGGCAGTTG CTCTTTGCTG AAAGGCACTG GCCCCTTATC GACCATTGGT 
    GCCAGTTTTT ACAGGTGAGG CATAATAAAG CCATTTCTAG GGACACATGG 
    TCTCAACTGT TGGAATTTGT CAAGACGATC GATCCACAGT TATCCAACTA 
    CGACGAAGAA GGTGCTTGGC CCTACCTAAT AGATGAATTT GTGGAGTACC 
    TAACCGAGAA TGGATTCGTT CAGCTTAGGA AGTGAACAAT GGGAGGCCCA 
    CATTCTCACT ACTTCAAATA CAATCATGAT TGGGCTGTAC AAACGTGTGA 
    GATTCATCTC GGTCTATACA GTGTTCAGGG CTTGGCCTTG GCGTTCTTGC 
    GCAACTGATC GCAAACAGTG GACATGTATC CTTACGTGAT GACATTTGCT 
    CGCGCAAGGG GACGATTTGA TTTGGGAAGT GGTGACTGCC ATTGTGGAAT 
    TATCACTTAC GGTTTATTTA AT

    Gene models with high sequence identity

    1. AT3G12760.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein...
      E-value: 5e-106; Score: 381.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Defective-in-cullin neddylation protein 9.2e-105
    superfamily UBA-like 0.0000000069
    ProfileScan Protein of unknown function DUF298 58.972
    HMMPfam Protein of unknown function DUF298 2.7e-42

    See the detailed result >

    AT3G12760.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR