K19913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19913

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19913

Determination of introduced cDNA(s)

J033114P19 - Rice Full-length cDNAs - Original: J033114P19

full reading [+] show sequence

GGCCGATCCC TTGCGCTAGC CATCTTCCGC GAAAAATGGC CATCGTTTGG 
GGTTTTCGGT TTTGTTGTGT TGGTGTGGTT CTTGCTGCTT GATTTGTCCG 
CCTGAGTTAG CTGACAGGAT CTTGCATGCT CTAGACCAGA TTTTCTCTAT 
TGGTTCCACA TCCCGCAACC TCTTCTTTGC TCCTTGCTGT GCTGCTTCTG 
TCTTTGAAGC TCACATTTCT TCGAAGGGAT TTCACGCTGT CGGCTAGGCT 
GCGCTACAAG TGCACCGTGT GAAGAATGCA AACAGGAGCT ACAAGCCAGT 
TGCCAATGAA CTAATGATCA CTTTCACTAG GTGGACAACT GTTGAGGGGT 
GCATTGAAGT TCCTATTGAT TTCCCTACTG TGGTTTTCTC CCTGACACCT 
TTCGATGATG TTGCTAAGTT TGTGGACAAT AATGATTTTT TATTGATGTT 
ATGGGTGTCA TTACTGACAT ATCTACACCC ACAATGCTTC GTCCTAGATC 
AAGGGATGCT GACAGCTTGA AAAGAACTAT TCAGATACGC GATGCAAAGT 
ATTCTTTATG CCTCTTATTT TGTTCCTTGC TTATTTATTT ATCCTGACCA 
CTAACAACTA ATAAAACTAG CACAAACACA GCCAATAGCC ACTCTAATAA 
AATTTATTGA TATTCTTAAC ATGTACACCA CATTTTTCCT GTTTTTTTAC 
ACAAATAGCA ATTCTACCTT GAATGTGTCT CTCTGGGCTG AACAAGCATC 
TGCGTTTGAG GCTGACGCTA TACACAAGGC TGGATTGGCA CTATCTGAAG 
GTTCTGCTTG CAAATGGTAC ATTAACATTG ATGTACCTGC GATAGTTGAA 
TTAAAGGACA AGACTGGGAC AAACTTCCAG CCAATCAATT GGATTGAGGC 
TCCAGCCAGA GCAGCTGTTG AGGAAGTCGC TGAGAACAAG ACTGTGCGTG 
AACTTCTAGA GATCAATCCT CACAAGTGCA AGAAGGTTCG ATTTCAAGCT 
CATGTAACCG TTCGAAGGAT CTGCAATGAT AAGTGTTGGT GGTATGGTTC 
ATGTCAAAGA TGCTTCAAGG TTGCAAAACC TTATGGGTCC ACCTATAAAT 
GCACTAGCTG TTCCAACATC GCAGTGGCAG TACCAAGGTA CAGGATAGTA 
GTCATAGCTG GAGATGACTC TGATGATGCT ATGTTTGTTC TCTTTGGATG 
AACAGCCCAG CGCATTGTGC GAAGGCCAGT TGAAGCTCTT ATTGAGGAAG 
CACCAGCTGA CAGTGATTTT ATCCCTGATG AAATAACGGC TTTAGTTGGG 
AAGTCGTTTG TGTGGAATGT CAGCTTCACA GAAAATACGC TTAAGTTTGG 
GGATATCTCA TTCCAGGTCA ACAGCATTGT CTCCATTGAT GCTCCTGGTG 
AACCTCTTAT GTTGATGTCC CCAGGTGCTT CCCAGAGTTC TTCAGCCATG 
ATTTCACCTG GACCAAGTGG CTCATTGATG TCACCATCAA GGGGAAGTGA 
ACTTGGCATA GCTTCACCCG GTTCAACTGC AGCCAGCTCT CCACTGCCAA 
GGCGTGTTAT TACCACGGAC AAAAGCCAAG TTGTGCACAC ACCAACCAGC 
AAGTGCTCTG TCAGCATAGA TCAGGATGAC ATTTCTGCTG CTTTTTCTCC 
ACCAATGTCC CAGAAAGTGC AAGCTCCAGC TATTCCTGAT GATGATACAC 
TACTGGCTCA TGCATCTGGC TCAAAGAGCA AGTCTAGGAA GAGAGGTCCT 
CCTTCTCAAG CACCACCAGC AGTTAAGAAA CTATTCAAGG AAGGTGACAG 
CGATGAGAAA GAAACCACTG TTAGCCTGTC AGCTGACGCT TGATCCAGTA 
TACATGCATG CCCACTCAAG CATTTTGGCC ACCAAGTTGT AGCATCTTCG 
TCTGCCTGAA CCGAAGCGCA TGGAAGAATG CTGTCTTTGC CATATGTCTG 
AACCTTTTGC TATAAACTGT TGATCTCCAG CTATTACTTC TTAGTGACTT 
TCGAAATTAT TGTTCCCATC TCTTTTGGAA CCATCTTTAG CAATGTTTGT 
AAGCTTATTA TGGTTACATT AGCTATAGTC CAACCACGTG CTCAAAGTCC 
ATTACAGTTG CCAATATGTC AGTACGGCAA TGGACTTTGA ACAGTTGGCA 
TTGGCTTAGC TCCATGATAC CTTCTCAGGT TTCGCTTAGT AATGTTAGAC 
CAATCTTAAG ACTCATC

Gene models with high sequence identity

AT2G05642.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
E-value: 0.0000004; Score: 53.90

InterPro Scan Digest

Program	Description	E-value
superfamily	Nucleic acid-binding, OB-fold-like	0.000000011
Gene3D	Nucleic acid-binding, OB-fold	0.00092

See the detailed result >

AT2G05642.1

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF223 (InterPro:IPR003871), Replication factor A, C-terminal (InterPro:IPR013955); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR