K19930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19930

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19930

Determination of introduced cDNA(s)

  • J023098H12 - Rice Full-length cDNAs - Original: J023098H12

    full reading [+] show sequence

    Nucleotide sequence: J023098H12 - full reading 
    GAGCCAAGCT ACTGTAGCTA ATGGTAGGGC GCGTGCGACA GTGGAGTAAA 
    GTGAAGCAGC AGCAGAGAAG CAGAGACCAT TTCCCTCCTC CCTCCTCTCT 
    CGCCAAACAC GACGACGTCG CCTCGGTTTA GTCGTCGTCG GCCGGCAGCC 
    GGATGACGGG CAGTAGTTGT CCGGCCGATT CTTCCCAGCT GCTGTACCCT 
    CGCCGGGAGG GTGGTGGGGG ACGTGGTGGA CCCGTTCGTG AGGAGGGTGG 
    CGCTGCGGGT GGCGTACGGA GCGCGGGAGG TGGCCAACGG CTGCGAGCTC 
    CGCCCCTCCG CCGTCGCCGA CCAGCCCCGC GTCGCCGTCG GCGGCCCCGA 
    CATGCGCACC TTCTACACCC TGGTGATGGT GGATCCGGAC GCGCCGAGCC 
    CGAGCGATCC AAACCTCAGG GAGTACCTGC ACTGGTGAGT CATCGATCGA 
    GTCAGCACAC CAGCAGCTGT TGTAGCTGAC GCGCCCTGTG ACGACTGATC 
    TGATTCAGAT TCAGAGTCCA GATTCAGCTC CCTGCACCGC ACCCTCGTCG 
    TCTCGTGTCG TCTCGTCTAT CGTGTCGTAC GAGATAGAGC GTATAGCTAT 
    AGCCAGCCAA GTGCCCGTGT TGGTGTTGCA CTTGCCGCCA CGAGATCGAT 
    CGAGCCCTTT TTGCCTCTTT TTTTTTTTAA AAAAAAAAGA GAGAATATTT 
    TTGCATCCGG GTAGCAGCCA GTGAATACAG TTACGAAACA TGAACGTTTG 
    ATCGTTGACT GCATGCTAGC TAGCTGCTTT TCAAAAGAAA AAGGGCACAC 
    ATTTCTTTTA ATTTAGATGA AAAACAATAT ATATGGATCG ATCACACATT 
    AATCTCTCTC TGCAAATTCT GCTATAGTGA TGTGCCGAGC ACTGTTTGAT 
    TGGGCCTTCT AGCTAGTTTT CCTCGAGATA ATAACACACT CATATGTATA 
    ATATACTGTA TATAATATAT GATCATGATC TCTGGAATGA TCATTACGTC 
    GTCTTTGGGA GAAAAACACA TGATTTTACA CAAACTGAGA TATAGCAAAG 
    CAGGAACGAC ATTGAGTAGA CGATCTTAAG ATAGTATATA TTCAATCGAT 
    CGTACGTAGG CAAATAAACT AATTAATTAA TCAACTGACT GAGATACTAG 
    CTTTATTACA GAAACAACAC CAAATTTATC AGCATTCAAA CATTATTTTA 
    TTTATTATTA ATTTCCATGG AATGTCTCAA ACAATGTCAG AAAATCAGGT 
    GATGTTTTAA GTGCAGTATA GTAGTTTTTT ATGTGTACAA AAGTTCAATA 
    TATATTTTTC AGAATCATTT CAATAAATAC ATCATAGCTG GGATTATCGG 
    TAAAATATTG TCACATATAA TTCCTAGCTA GGAAAAATAT ATAAAACAAT 
    TTGCCTGTAT CTACAGTAGT TGCACATGCT AAGGAATTGT ATATATGGAT 
    TGGTAGATAT TATATTTGTA TTGCACATCC ATGAAGAGAT AAGAGGTTTA 
    ATTTTACTCT TCCATTATCT AAAAGGCAGG TAAAACATTT CCATTAATTA 
    TCTACAAAAA GTCTAAAAGG TAAATATCAT GTTGGATATA TGTATCAAAC 
    GATAGGGTTT TCTAAAACAT TCTGTCCAAC AATTTAAAAT GTGCTTAGTT 
    TCTTTTTTTC CCCTTGTTTA GAAAATAGTT TTTATGAAGT TATTTTGAGT 
    GGCATTTTCC CTCAAATGTG GTGTGTATGA AATTTACTAA ACAATTTAAC 
    ATTTGAGCTT AAATGCATAC ACATCACATG AAATTAATAG CAAAACAAGT 
    TGATTTCTTC TCTTCCTAGC TTGGTTCAAC TAAAGTAATT AAGAGATGAT 
    AAAATATTAT TTGGATAAAA GATGGTGTAA ATTAAAGTAT CTATATCTGA 
    AACTAGAGAA TAGATTTTGA TTTTTCTTGA TAAATTTATT AGAGAAGAAT 
    TTGCAGTACA CATAAAAACA AGCCAAGAAA GTAAAAGTAA TTAAGGAGGG 
    AATTAATGTA ATGTGCACAA TTGCTAGAGG AACATTTGAA AAGTAATCCA 
    TATTTATTTG ATGTCTTTTG CATGGTTGCA TTTCCGATTA ATGTTCATAT 
    ATATGTGAGG CCTTCGAAGT AATTTACCAA TTAAAATGAT AATTTGCATG 
    CACATTTTGT ATTGTATATA GTGATGACAT AAAATGATTT TGATTGGCAT 
    TGCTACAAAA ATGATTTTGG CATTGCTGTA TATGATCATA CGGCCGGGGA 
    TATTGATTGC AATCAGTTGC TTTTGTCAAT AGTTAATTAG AATTTTCGAG 
    TGTGAAGGGA GCTTATAGAC GAACTGACCG AAACAATAAA ATTAAGAATC 
    CTCCCAACAC AAAACCCTCA TGTGCACTGT ACGTAGATGT GTCCAAAGAT 
    CATGTGCAAA ATTTGTACAA TCAATGAAAA TAGGACCGGA TGTTTCACAT 
    ATATAGTTAA TTAAATTCCA GGCCATAATT TTTTAACAAA ACAAGGTTGA 
    TTATACTAAA TATAAGAAAT GATTATAAGT CTATTGTTAC AATAAAGGAC 
    ATAAAATTTG CCAAGACAAA CCAATATACT CCATATATAG CTCAAAAAGT 
    CACAAGCTAG AGATGCGAGC AGAAGAGCGC AACCACAATC CTTTTGAGTT 
    ATTTGTGCAA CAAAAACTCT ATTTCTTAAT ATATTGACGT GCAATCCTTT 
    TGCGCGTTCG CGAAAAAGAA GAGCGCAACC ACAACATTGT TGACGTCACC 
    AACTCCAGCA CATGCAAAAG TATATATGAA TGTGTATATG TCACCATCTT 
    CGATCCTTTG ACAAATCTGT AAGTCAACGT CATCAAACAA ATTGGAGACC 
    CAGATTTTAA AATCCGCACC ACCGATTGAA TCGTCGGTAA CTTAGCATAC 
    AAATCTTCCT AGATCTTCAT CGATGATCCC AGAAATACAG AAGACATTGT 
    CAAAGATAT

    Gene models with high sequence identity

    1. AT1G65480.1 [+] show detail - PEBP (phosphatidylethanolamine-binding protein) family protein
      E-value: 2e-27; Score: 122.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Phosphatidylethanolamine-binding protein PEBP 2e-23
    HMMPanther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 1.7e-22
    PatternScan Phosphatidylethanolamine-binding, conserved site 0
    HMMPfam Phosphatidylethanolamine-binding protein PEBP 1.4e-10
    Gene3D Phosphatidylethanolamine-binding protein PEBP 6.8e-23

    See the detailed result >

    AT1G65480.1

    Model type
    Protein coding
    Short Description
    PEBP (phosphatidylethanolamine-binding protein) family protein
    Curator Summary
    FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
    Computational Description
    FLOWERING LOCUS T (FT); FUNCTIONS IN: phosphatidylethanolamine binding, protein binding; INVOLVED IN: photoperiodism, flowering, positive regulation of flower development, regulation of flower development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT4G20370.1); Has 2182 Blast hits to 2182 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 140; Plants - 1404; Viruses - 3; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR