K20004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20004

Determination of introduced cDNA(s)

  • J013100H21 - Rice Full-length cDNAs - Original: J013100H21

    full reading [+] show sequence

    Nucleotide sequence: J013100H21 - full reading 
    GTGGTGGGTT GCAAGCCGCC CGGCTGTGAG AAAGCCAGGC AGGAGGAGGC 
    GCAGCAGCAC TAGCCGCGGT ATAAAACATC CAAGCGCTCC TCCATCGTCG 
    CCACCGCTCC GGTTTGCCTC CCGCGCGAGC CCTCGTCGAC GCCGCCGGTA 
    TATTGCTGAA GGAAGAAGAG CACCAACCTA TTTATCATGT CAGGAGGATC 
    TTCACCAAGG TCAAGACGAA GCAGCTTTAA TTCTTTATCA AGAGATCTCG 
    AACTCCCTTC AGAGCAAGGT TGTCTCTCTG TTATTGTCCT CGGGGCTTCT 
    GGAGACCTAG CCAAGAAGAA AACTTTCCCG GCACTCTTCC ATCTTTTTGC 
    ACAGGGATTT ATACAATCAG GTGAAGTGCA TATATTTGGG TATGCGAGAT 
    CAAACCTTTC TGATGATGGG TTAAGGGAAC GCATTCGTGG ATACCTCAAA 
    GGAGCCTCAG AAGAACATCT CTCAGACTTT TTGCAACATA TAAAATATGT 
    CAGTGGTTCC TATGACAGCG GAGAAGGATT TGAGAAATTG AACAAGGAAA 
    TTTCAGAGTA TGAGAAGTCA AACAAATCAG AAAGCCCTCG CAGGCTCTTC 
    TATTTGGCAT TGCCTCCATC TGTCTACCCT TCAGTCTGCA AAATGATCAG 
    AACATATTGC ATGAATCCAT CTGGATGGAC TAGAGTCATT GTTGAGAAGC 
    CATTTGGAAA GGACTTGGAC TCTGCAGAAG AATTAAGTGC CCAACTTGGG 
    GAGCTATTTG ACGAAAACCA ACTCTACAGA ATTGATCACT ACTTGGGAAA 
    AGAGTTGGTC CAAAACCTGC TTGTGCTTCG TTTTGCCAAC CGCTTGTTCT 
    TGCCTCTTTG GAACCGTGAC AATATTGATA ATATACAGAT TGTATTCAGG 
    GAGGACTTTG GGACTGACGG GCGTGGTGGA TATTTTGATC AATATGGAAT 
    CATTCGTGAC ATCATCCAGA ACCATTTGTT ACAGGTTTTC TGTTTGGTTG 
    CAATGGAAAA GCCTGTCTCT CTTAAGCCTG AGCACATTAG AGATGAGAAA 
    GTCAAGGTTC TGCAGTCCGT GAACCCTATA AAGCATGATG AGGTTGTCCT 
    TGGACAATAC GAGGGGTACA AGGATGACCC TACAGTGCCA GATGACTCAA 
    ACACCCCAAC TTTTGCATCT GTCGTGCTTC GGGTACACAA TGAAAGATGG 
    GAGGGTGTTC CTTTCATTCT TAAAGCTGGT AAAGCACTAA GCTCAAGGAA 
    AGCAGAAGTC CGTGTGCAGT TCAAAGATGT TCCTGGTGAC ATCTTTAAAT 
    GTAAAAGGCA AGGAAGAAAT GAGTTTGTCA TACGCCTTCA GCCATCAGAA 
    GCCATGTACA TGAAACTTAC TGTCAAAAAA CCTGGATTGG AGATGGCCAC 
    CGAGCAGAGT GAACTTGATC TGTCATACGG GATGCGGTAC CAAAACGTCA 
    AAATTCCAGA GGCATACGAG CGTCTCATAT TGGATACGAT ACGAGGAGAC 
    CAACAGCACT TCGTTCGCCG AGATGAGCTG AAGGCTGCTT GGCAGATCTT 
    CACTCCCCTG CTGCACGACA TCGACGAAGG CAAGGTGAAG TCTATTCCAT 
    ACCAGCCTGG CAGCCGAGGC CCCAAGGAAG CCGATGAACT GAGCGAGAGG 
    GTTGGGTATA TGCAGACCCA CGGTTACATA TGGATACCAC CCACCCTTGC 
    ATAGACAGAC AGACAGACAG ACAGTAGTAT TGTTTAGCTA GGAAGAGTGC 
    CTCTAAACTG TTATTATTGC GGATATATTC GTTTCATATT TTCACGATAA 
    CGCCTGACTA GTGTCTACCT GGCGTTGTAA TAATGTGTTG CTTCGTAAGT 
    ATAACTGCTA TTGTGAAATA AAAGTGCATG TTTCGATCGA TGAACAGTGT 
    CAGGTTTTGG GCATTGTAGA TACACTGATG ATGAATGGAT GGCTGCCAAC 
    ATTGTTGTTT G

    Gene models with high sequence identity

    1. AT5G40760.1 [+] show detail - glucose-6-phosphate dehydrogenase 6
      E-value: 0; Score: 801.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 4e-141
    superfamily NAD(P)-binding domain 8.1e-71
    HMMPIR Glucose-6-phosphate dehydrogenase 1.7e-212
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    FPrintScan Glucose-6-phosphate dehydrogenase 2.2e-55
    HMMTigr Glucose-6-phosphate dehydrogenase 5.1e-237
    Gene3D NAD(P)-binding domain 2.2e-49
    Gene3D no description 1.9e-115
    PatternScan Glucose-6-phosphate dehydrogenase, active site 0
    HMMPanther Glucose-6-phosphate dehydrogenase 2.2e-230
    HMMPfam Glucose-6-phosphate dehydrogenase 1.7e-129
    HMMPfam Glucose-6-phosphate dehydrogenase 1.1e-62

    See the detailed result >

    AT5G40760.1

    Model type
    Protein coding
    Short Description
    glucose-6-phosphate dehydrogenase 6
    Curator Summary
    Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously.
    Computational Description
    glucose-6-phosphate dehydrogenase 6 (G6PD6); CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 5 (TAIR:AT3G27300.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR