K20009

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20009

Determination of introduced cDNA(s)

  • J023072A14 - Rice Full-length cDNAs - Original: J023072A14

    full reading [+] show sequence

    Nucleotide sequence: J023072A14 - full reading 
    GACCCCACCA CCTCCGGTCC ATCTCGGCCG CCGCCGCTGT CGCTGTCGCG 
    ATCGCGATCC CCGCCTAGAT AGACTTCCCC AAGAACCCGC CGCCGCCGCT 
    GCAGGGGTGG CGTGGCATCG CGGGAGACCA GCTCGAGCCT TCAGCCTCTT 
    TTGCGCCGCC GCCGCCGCCG CCGGTCGATC CGTGTTCTTG GCTCAGGCGG 
    CGTCAATGGC GGCGGCGAAT GGGAGCGCCT GCGGCGGAGG CGGCGTGGAC 
    AAGGAGAAGG AGGAGTTCAA GCAGATCTAC GGGGTGCTCA AGGAGGAGCT 
    GCTCAGGGAC CCCGCCTTCG AGTTCACCGA CTCGTCGCGG CAGTGGATCG 
    ATCGCATGTT GGACTACAAT GTACCTGGAG GGAAGTGCAA TCGTGGTCTC 
    TCTGTGGTCG ATAGCTATAA GCTGTTGAAG GGCACCAATG TTCTAAGTCA 
    GGAAGACATG TTTCTCGCGA GCACTCTTGG TTGGTGCGTT GAATGGCTTC 
    AAGCTTACTT TCTCGTGCTT GATGATATCA TGGATGATTC TCACACTCGA 
    CGTGGTCAGC CTTGTTGGTT TCGGGTGCCT CAGGTTGGCT CCATTGCTAT 
    CAATGATGGG ATTATCCTTC GCAACCATAT CACGCGAATG CTTCGGCTCC 
    ACTTTAGAGG AAAACTTTAC TATGCTGATC TCCTTGATTT ATTCAATGAG 
    GTCGAGTTCA AGACAGCTTC AGGTCAATTG CTAGACCTTA TCACTACTCA 
    CGAGGGAGAA AAAGATCTAA ACAAATATAA CATAGGAGTT CACCGCCGCA 
    TTGTTCAATA TAAGACATCC TACTATTCAT TTTATCTGCC GGTTGCTTGT 
    GCACTGTTGC TATCTGGAGA GGACTTGACC AAATATGGTG CTGTAGAAGA 
    CATTCTTGTT AAGATGGGAA TATACTTTCA AGTCCAAGAC GATTATCTAG 
    ATTGTTATGG TGACCCCAAA TTTATTGGCA AGATCGGGAC TGACATTGAA 
    GATTACAAAT GCTCTTGGCT AGTTGTGCAA GCCCTTGAGC GTGCTGATGA 
    GAGTCAAAAG AGCGTTCTAT TTGAAAATTA TGGAAAGAAA GATCCAGCCT 
    GTGTGGCAAA AGTGAAGAGC CTCTACAGAG AACTAAACCT AGAGGCGGTC 
    TTTCTGGACT ATGAGAACGA GAGTTACAAG AAGTTGATTG CGGATATAGA 
    AGCCCAGCCA AGCATAGCTG TTCAGAATGT TCTGAAGTCC TTCTTGCACA 
    AGATCTACAA GAGACAGAAG TAGGGGGGGT TTCTGTGCAG GAAGCTGTCC 
    ATTGTTGCAT GTTTCTTCTC TAGCAACTGA TGTTGTATGT TGCAATTTGC 
    TGATCTTGGA TAATAATGTT GCAAGGTGTT ATTTCGGGTG TGATGGACCG 
    CTTGGTGTAG ACATTAGACA ATAATACATG AGCTGTTTGT CTTGTTATTA 
    GC

    Gene models with high sequence identity

    1. AT5G47770.1 [+] show detail - farnesyl diphosphate synthase 1
      E-value: 1e-141; Score: 499.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyprenyl synthetase 2.1e-74
    superfamily Terpenoid synthase 3.2e-96
    HMMPanther FARNESYL-PYROPHOSPHATE SYNTHETASE 2.8e-161
    Gene3D Terpenoid synthase 5.6e-98
    PatternScan Polyprenyl synthetase 0
    PatternScan Polyprenyl synthetase 0

    See the detailed result >

    AT5G47770.1

    Model type
    Protein coding
    Short Description
    farnesyl diphosphate synthase 1
    Curator Summary
    Encodes a protein with farnesyl diphosphate synthase activity.
    Computational Description
    farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR