K20023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20023

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20023

Determination of introduced cDNA(s)

J023126C02 - Rice Full-length cDNAs - Original: J023126C02

full reading [+] show sequence

GTACGGCAAG CAAAACCCCC ACACTTCCCG GCGGCGGCGG CGGCGGTGAC 
GGCGGCGGCG ATGGAGACGG TGGAGACGCT GGTGGCGCAC ATCCAGGGCC 
TCTCCGGGAG CGGGGAGGAG CTGGCCCACC TCCACAACCT TCTCCGGCAG 
GCCGACGGCG AGCCCCTGCG CGCCCACTCC GCCGCCCTCC TCCCCTTCCT 
CGCCCAGCTC CACCCGAGCG CCCACTCCCT CGGCTTCCTC TACCTCCTGG 
AGGCGTTCGC GTCTTCGGCT TCCAACCTGA GGGCGCAGGG CGGCGGGGAC 
TTCCTGGTCA CCACGGCCGA TTTCCTCGTC TCCTGCTCGG CGGAGCAGAT 
ACGCTTGGCG CCTGATAAGT TTCTGAGTGT GTGTAGGGTG TTCAAGAATG 
AGGTCATGCA GCTCAACGCG CCGATTAGAG GGATTGCCCC TCTGCGGGCG 
GCAATCCGCA AGATTCAGAC TTCGTCTGAA GAGCTGACCC CGATCCATGC 
GGATTACCTT CTCCTGTGCC TGCTTGCGAA GCAGTACAAG GCTGGCCTAA 
GCGTCCTGGA AGACGACATA CTCGAAGTTG ATCAGCCAAA GGACTTATTC 
CTCTATTGCT ACTATGGGGG AATGATATAC ATTGGGCTGA AGAAGTTCAC 
TATAGCACTG GATTTTCTTC ACAATGCTGT TACCGTCCCA ATGTCATCAT 
TGAATGCTAT TGCTGTTGAA GCTTACAAGA AATACATCCT AGTTTCGCTC 
ATTCAGAATG GGCAGGTTCC ATCATTTCCA AAGTACACAT CTTCAACTGC 
TCAAAGGAAC CTCAAAAATC ATGCTCAGGT TTATGTTGAC CTGTCAACAT 
GCTACAGCAA AGGTAACTAC TCTGAATTAG AGGAGTATAT CCAGCTGAAT 
GCTGAGAAGT TTCAATCGGA CAACAACCTT GGACTTGTGA AGCAAGTGCT 
CTCCTCAATG TACAAGCGAA ACATCCAGAG GTTGACACAG ACCTACTTGA 
CTCTTTCGCT TGAGGATATT GCCAGCTCTG TTCAACTTAA AACCCCGAAG 
GAGGCTGAGA TGCATGTGCT TAGGATGATT GAAGATGGTG AGATCCATGC 
AACCATAAAC CAGAAGGATG GGATGGTCAG CTTTCATGAA GATCCTGAGC 
AATATAAAAG CTGTGAGATG GTTGAGCATA TTGACTCGTC TATTCAAAGG 
TTGATGGCTT TGTCCAAGAA GCTGTCTTCT ATTGATGAGA ACATCTCGTG 
CGATCCTGCA TATTTAATGA AGACTGGAAG AGAGCGTGGT GGAAGATTCG 
ATTACGATGA CTTCGACTCA GTTCCGCACA AATATTTTTG AGACGACCTC 
TGCATTATGT GACTCGAGGT AGTACATTAG TCAAACTAGT TGTTCTCATG 
ATTGCCAGTT TGATCCGTAC ATTCCGCCCA TCAAAATTTA AACCCTGTAA 
ATTCTGGCGT TAAAGAATGG TGCTTTTGAA CCAGAGACTG AATCAGTTGG 
TAGTTTATTC AATCAGCTAT CCTCTTGGAT GCATTTTGCT GC

Gene models with high sequence identity

AT5G14250.1 [+] show detail - Proteasome component (PCI) domain protein
E-value: 4e-124; Score: 442.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	26S PROTEASOME REGULATORY SUBUNIT S3	6.3e-88
Gene3D	Winged helix-turn-helix transcription repressor DNA-binding	8.5e-06
HMMPfam	Proteasome component (PCI) domain	3.2e-19
superfamily	"Winged helix" DNA-binding domain	6e-14
HMMSmart	Proteasome component (PCI) domain	1.3e-23

See the detailed result >

AT5G14250.1

Model type: Protein coding
Short Description: Proteasome component (PCI) domain protein
Curator Summary: Encodes subunit 3 of the COP9 signalosome.
Computational Description: CONSTITUTIVE PHOTOMORPHOGENIC 13 (COP13); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR