K20027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20027

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20027

Determination of introduced cDNA(s)

J023076A13 - Rice Full-length cDNAs - Original: J023076A13

full reading [+] show sequence

GATTTTTCTT CCCCGTCACC ACCACCTCCA CCTCCTCGAT CGACGCATCC 
CTCCGCCGCT CGCAGCTCTC CTCCGGCGGC CATGGCGGCG GCGGCGCAGA 
GGCTCCTGGC GGCCAGCACG AAGATCGTAG GGGTGGGCCG CAACTTCGTC 
GCCCACGCCA AGGAGCTCGG GAACCCCGTC CCCAAGGAGC CGGTGCTGTT 
CCTGAAGCCC ACCTCGTCGT TCCTCCACGC GGGCGTGGCC GGCGCCGCCA 
TCGAGGTGCC GGAGCCGGTC GAGTCGCTGC ACCACGAGGT CGAGCTTGCC 
GTTGTCATCT CCCAGCGCGC GCGCGACGTC CCCGAAGCAT CCGCCATGGA 
CTTCGTAGGA GGTTATGCAC TTGCTTTGGA CATGACAGCA AGAGAACTTC 
AGTCTGCGGC TAAGTCTGCA GGTCTTCCTT GGACTTTGGG TAAAGCACAG 
GACACCTTCA CTCCAATTAG TGCAGTGATT CCAAAATCAG ATGTAGCTAA 
TCCTGATGAT CTAGAGCTCT GGCTAAAGGT TGATGATGAA CTTAGGCAGA 
AGGGATCTAC AAGTGATATG ATATTCAAGA TACCATCTCT AATAAGTTAT 
ATCAGTTCCA TCATGACATT AATGGAGGGT GATGTTATAC TGACCGGTAC 
TCCTGAGGGT GTAGGCCCAG TACGACCAGG ACAGAAGATC AAAGCTGGTA 
TAACCGGCCT CATTGATGTT GAGTTTGATG TTCAGAAGCG CAAGCGGTCA 
TTTTCTACTT GATGTGATAG AGCTTCGAGA GCATTTGTAT CAAGAAAATC 
CTGGATCTGT TCTTGGGAAA TCCAGACCGT ACTTTACCCC CACATTGTTA 
TCCCGGATCT GTTTATAGCA AACAGACCTT TCATGAACTA TACCGGTGCT 
GTATTTTTGT CCATGTTGAT GGAGCTCTAA GCTCTCTGCA ATAATAGCAA 
ATCTCTTGTC GCCAAGCACA CTTGATTTGT CTACCTGTGG CAAAATACGC 
AGCGGTAGTA ATACCCATGT AAATATTATG CTGCCGATTC CATCTAACAG 
CTAAACTGTT AATGTTGTGA ATGTCTTGTT GAAATTATAA GCACATAATG 
ATTTAATTTA TT

Gene models with high sequence identity

AT4G15940.1 [+] show detail - Fumarylacetoacetate (FAA) hydrolase family
E-value: 6e-84; Score: 308.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Fumarylacetoacetase, C-terminal-related	8.3e-66
HMMPanther	FUMARYLACETOACETATE HYDROLASE DOMAIN CONTAINI	1.9e-110
HMMPanther	FUMARYLACETOACETATE HYDROLASE	1.9e-110
HMMPfam	Fumarylacetoacetase, C-terminal-like	5.1e-56
Gene3D	Fumarylacetoacetase, C-terminal-related	1.9e-72

See the detailed result >

AT4G15940.1

Model type: Protein coding
Short Description: Fumarylacetoacetate (FAA) hydrolase family
Computational Description: Fumarylacetoacetate (FAA) hydrolase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: Fumarylacetoacetate (FAA) hydrolase family (TAIR:AT3G16700.1); Has 10822 Blast hits to 10670 proteins in 1907 species: Archae - 249; Bacteria - 6730; Metazoa - 306; Fungi - 435; Plants - 75; Viruses - 0; Other Eukaryotes - 3027 (source: NCBI BLink).
Link: InterPro Scan - TAIR