K20028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20028

Determination of introduced cDNA(s)

J023060F18 - Rice Full-length cDNAs - Original: J023060F18

full reading [+] show sequence

GACGCGCCGC GCGACACAAT CAGTTCACCA CCGCAGCCAC CCCTAGCTAA 
ATCCCTCGGC GGCGGGGGAG GTGGCGGCGT GCGTGGGCAT CTCGGCGGGG 
GTCGTACGCT CATGTCGGCG CTGGTTTGGC TCTGCGTATT GGTTTTAAGT 
GGATTTCCTG TGCACAATGT CATCGATTCT TCGATCCATT CAGCTGAGGA 
ACAGTATATG GAGTAGCTTC CCTGTCAGAT TTCTTAAGCA ACAAGCCGGA 
TTATCAACTG TAGAATTGCT TGATCCTAGA AGCTGTGGGA AACGACATTT 
CACAACACAA GTACAGGAAC ATGGGAAGGA AGTTGCGGCG GCAGCAACTA 
TTCTAGTTTT TGATCTTGAG ACTACTGGCT ATTTCCATAA GGATCATAGA 
ATAGTTGAGT TTGCACTCTG TGATCTTTCT GGAGGAAAGA ATAGCACTTT 
TGAAACTCTT GTTAATCCTG AAAGGACTGT TCCTGACTAC GTTGAACATC 
TCATTAAAAT TGGCACTGAT CTCGTGTGCA GGCCTGGTAT CCCAAGGTTT 
AGTGATGTAA TCCCACTACT ATTGGCATTC GTTCGAAGTC GCCAAGCTCC 
TGGCAAGCCA GTTCTGTGGG TTGCTCATAA CGCAAAACAA TTTGATGCTC 
GTTTCCTTGC TCAGGAGTTT GATCGTTGTT CAGCACCACT TCCTGCAGAT 
TGGCTGTTTT TTGACACCCT TCTCTTGGCA AAAAAGATGG TGAAAGCAGA 
GGGAAAAAAA CGTCGTACAA GCTTGGAGGC ACTGAGAGAA CACTATGGCA 
TCGTCTCGCA TGACGATGCG CATAGAGCAA TGCGAGATGT TATGATATTG 
TCTCAGGTTT TCCAGAAAAT GACTTTTGAT CTAAAACTGA CAAATGAAGA 
ACTAATAAAC GAGGCCATGA AGGCAAGTGA ATTCAGCAAG ATTTCTTAAT 
TTTTAAAACT CCAGCTTTTT TTAGTGCTTA AACTTATTTA ACCTTCTGTG 
CACATGCTGG ATATTTTTCT AGCTGGTGTC ATCTCGGCAT TAAAGAACTA 
TGCCTTTTTT ACTATTGAAA TAGTACCTGT ATTTTTCAAT AAAAACCTGC 
AATTTGGACC GAACAAGTTG ATATCTTCAT TGCTACCAGG ATGATAAAAC 
CATGGCTGAA CCATTTGCAT TGGATGACCA TCACATCTAT TTGATATGCT 
TCGGTGCTGG ATTCAGTGTG GAATGATATT TCTTTGATTT GTCTTGCTTT 
ATCTATGAGC TGTCAGCTAT TGAAAAGTAT TATTAGTGCT TTTTATTCTT 
GGGTAGCATA TGCCATTTAA ATTATTTGAA CTTGTGAGAT CAATACATCC 
TGGTGGAAGT TAGTTGGGAC CTGTT

Gene models with high sequence identity

AT5G26940.4 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
E-value: 4e-47; Score: 186.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Exonuclease, RNase T/DNA polymerase III	1.8e-21
Gene3D	no description	7.4e-27
superfamily	Polynucleotidyl transferase, ribonuclease H fold	2.8e-31
HMMSmart	Exonuclease	2.9e-37

See the detailed result >

AT5G26940.4

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR