K20028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20028

Determination of introduced cDNA(s)

  • J023060F18 - Rice Full-length cDNAs - Original: J023060F18

    full reading [+] show sequence

    Nucleotide sequence: J023060F18 - full reading
    GACGCGCCGC GCGACACAAT CAGTTCACCA CCGCAGCCAC CCCTAGCTAA 
    ATCCCTCGGC GGCGGGGGAG GTGGCGGCGT GCGTGGGCAT CTCGGCGGGG
    GTCGTACGCT CATGTCGGCG CTGGTTTGGC TCTGCGTATT GGTTTTAAGT
    GGATTTCCTG TGCACAATGT CATCGATTCT TCGATCCATT CAGCTGAGGA
    ACAGTATATG GAGTAGCTTC CCTGTCAGAT TTCTTAAGCA ACAAGCCGGA
    TTATCAACTG TAGAATTGCT TGATCCTAGA AGCTGTGGGA AACGACATTT
    CACAACACAA GTACAGGAAC ATGGGAAGGA AGTTGCGGCG GCAGCAACTA
    TTCTAGTTTT TGATCTTGAG ACTACTGGCT ATTTCCATAA GGATCATAGA
    ATAGTTGAGT TTGCACTCTG TGATCTTTCT GGAGGAAAGA ATAGCACTTT
    TGAAACTCTT GTTAATCCTG AAAGGACTGT TCCTGACTAC GTTGAACATC
    TCATTAAAAT TGGCACTGAT CTCGTGTGCA GGCCTGGTAT CCCAAGGTTT
    AGTGATGTAA TCCCACTACT ATTGGCATTC GTTCGAAGTC GCCAAGCTCC
    TGGCAAGCCA GTTCTGTGGG TTGCTCATAA CGCAAAACAA TTTGATGCTC
    GTTTCCTTGC TCAGGAGTTT GATCGTTGTT CAGCACCACT TCCTGCAGAT
    TGGCTGTTTT TTGACACCCT TCTCTTGGCA AAAAAGATGG TGAAAGCAGA
    GGGAAAAAAA CGTCGTACAA GCTTGGAGGC ACTGAGAGAA CACTATGGCA
    TCGTCTCGCA TGACGATGCG CATAGAGCAA TGCGAGATGT TATGATATTG
    TCTCAGGTTT TCCAGAAAAT GACTTTTGAT CTAAAACTGA CAAATGAAGA
    ACTAATAAAC GAGGCCATGA AGGCAAGTGA ATTCAGCAAG ATTTCTTAAT
    TTTTAAAACT CCAGCTTTTT TTAGTGCTTA AACTTATTTA ACCTTCTGTG
    CACATGCTGG ATATTTTTCT AGCTGGTGTC ATCTCGGCAT TAAAGAACTA
    TGCCTTTTTT ACTATTGAAA TAGTACCTGT ATTTTTCAAT AAAAACCTGC
    AATTTGGACC GAACAAGTTG ATATCTTCAT TGCTACCAGG ATGATAAAAC
    CATGGCTGAA CCATTTGCAT TGGATGACCA TCACATCTAT TTGATATGCT
    TCGGTGCTGG ATTCAGTGTG GAATGATATT TCTTTGATTT GTCTTGCTTT
    ATCTATGAGC TGTCAGCTAT TGAAAAGTAT TATTAGTGCT TTTTATTCTT
    GGGTAGCATA TGCCATTTAA ATTATTTGAA CTTGTGAGAT CAATACATCC
    TGGTGGAAGT TAGTTGGGAC CTGTT

    Gene models with high sequence identity

    1. AT5G26940.4 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 4e-47; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exonuclease, RNase T/DNA polymerase III 1.8e-21
    Gene3D no description 7.4e-27
    superfamily Polynucleotidyl transferase, ribonuclease H fold 2.8e-31
    HMMSmart Exonuclease 2.9e-37

    See the detailed result >

    AT5G26940.4

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR