K20036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20036

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20036

Determination of introduced cDNA(s)

  • J023015A14 - Rice Full-length cDNAs - Original: J023015A14

    full reading [+] show sequence

    Nucleotide sequence: J023015A14 - full reading
    GTTTATTCTT TTGTATTTAA AACTTATTTT GACCATATGT TTGGTTATAG 
    TTATGACCAC TAGATTGTTA AGAGCAATAT TTATTTTAGC AGCTTCATGT
    AATGTAAAAA AATATTTGGA TGACAGTTAT CGTAGAAGTA AGCAATAGAA
    TTAACCATTT TTGTCGGCTA CATTGCTTTT CCTTTCATTT TGGTACTACA
    ACATGAGCTA GGGCCTAGGA GATGGTGCAT ATGGATGTTG AATCAAACTC
    TTTGAATGTA ATGCTGGTAT GATTGTTCAC CCAGAAATTT GAACTTTGGG
    CTTACAAGAA ACAGTTATTG TCTTTTTGTA TTTGTGATTT TGTAGAGACC
    AGAAATTTCC CAAGATAGTG ATATTTTACT GAGTAGCCCA GCATGTTTGC
    GCGTTGTAAC TCTTATTGGG CTAATTCTTT CTTATATCAT ACTTGTTGTC
    AAAGTTTTGA CTAGGGTCGT ATTATTTTGT GAGACTGTTT CTTATGTAGG
    TCATTGGTGC AGTTGGTTTC ATGAACCACA GGTTGGAGAT TCCTAGTGAA
    ACAGATCCTC AGTGGACATC ACTTATCCTG AGTTGTTGGG AAACTGACTC
    ACAACTCCGT CCATCGTTCC AACAACTTCT GGAGAGACTT CGAGAGCTGC
    AAAGGCAGTA CAATGTCCAG ACTCAGATGC AGCGAAATGC ATCCGCTGCT
    GCAAAAAATA GCAGCATTGA GGAATGAATG GAGATCCCTT ATGAGGCGAA
    CGATCAATTG ACACAATTTT GCAGGCGGTG CAGCGACACG CTAGCCTGAT
    CAGGATTCGC ACCTCCCGCG TGGTTACTGC TGATGATGCT GATTGATACA
    GCCATTGCTG AAGATTGAGC AAGACGAGGG AGCTGCCTCC TGAATCCTCT
    TGGCCTGAAG TTCCACCTGC AGCTTCGGAA TTCTGACCAA GGTAGAGAGT
    ACTGGAGCTG AGGCTGGCAC TTTTGGTGAA TTCTTCCATG ACAACTCCAA
    TTTATGCCTA GTCGAATGTC GACCAAGCTC GACTCTGTAA CGCGAAGGCG
    ACAATGATCT TGTGTAGATT GTTCTGACGA TCGACAACCA AATTGTATTC
    GAGTTGCTGA TCCTGATTAT GCATGAAAGT TGCACCATCA ACATTGTAAG
    GTTCAACCTG TTCTTTTGTT CTGCTCTGAT TCCTTCTCTG TTACTGTAAC
    CATGTTGTTT AGAATCCCAT CAGAACCCAA TCATTCTTGC TACTTCGACC
    ATGGATGGAA GAAATATGGA ATTGTGCCTT CAATTTCACA TTATTCAAAC
    TTTGGCTGCA AATAATTTAA ATGTCATCTA AGAAATACCC AGTAGCATTA
    TTAGATTTGA CATCTGTTTT TAAGTTTTAA CACGAATTTA TTCATAAAGA
    TTGAAGTT

    Gene models with high sequence identity

    1. AT1G67890.1 [+] show detail - PAS domain-containing protein tyrosine kinase family protein
      E-value: 0.0000000000007; Score: 72.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23257 6.90001478563499e-26
    HMMPfam Serine-threonine/tyrosine-protein kinase 0.0095
    HMMPanther PTHR23257:SF80 6.90001478563499e-26

    See the detailed result >

    AT1G67890.1

    Model type
    Protein coding
    Short Description
    PAS domain-containing protein tyrosine kinase family protein
    Computational Description
    PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT5G49470.3); Has 128751 Blast hits to 126912 proteins in 4876 species: Archae - 309; Bacteria - 16105; Metazoa - 47584; Fungi - 11405; Plants - 33369; Viruses - 523; Other Eukaryotes - 19456 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR