K20037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20037

Determination of introduced cDNA(s)

  • J023023L08 - Rice Full-length cDNAs - Original: J023023L08

    full reading [+] show sequence

    Nucleotide sequence: J023023L08 - full reading 
    GACAGTAGTA ATAAAACCTC CTCCTGTCGG CTTCCTCCTT CCTCCTCCCG 
    CCGCCGCACA GCGCAAACCC CGCCCAAAAC CCTAGCTAAG CCTAGCCGCC 
    ATGGACGCCG CCGCGCAGGA ATCCCTCATC CTGGAGCTCC ACGCCATCGA 
    GGCCATCAAG TTCGGCACCT TCGTGCTCAA GTCCGGCATC ACCTCCCCGA 
    TCTACCTCGA CCTCCGCGCG CTCGTCTCCC ACCCGGGCCT CCTCTCCTCC 
    ATCGCCACCC TCCTCCACAC CCTCCCGGCG ACCCGCCCCT ACGACCTCCT 
    CTGCGGCGTC CCCTACACCG CGCTCCCCAT CGCCTCCGTC CTCTCCGTCC 
    ACCGCTCCGT CCCCATGGTC ATGCGCCGCA AGGAGGCCAA GGCCCACGGC 
    ACCGCCAAGT CCATCGAGGG CGCCTTCCGC GCCGGGGAGG CCGTGCTCAT 
    CATCGAGGAC CTCGTCACCA GCGGCGCCTC CGTTCTCGAG ACCGCCGCGC 
    CGCTCCGCGA CCAGGGGCTC GTCGTCGCCG ACGCCGTCGT CGTCGTCGAC 
    CGCGAGCAGG GCGGGAGGGA GAACCTTGCC GCCAATGGGA TCACGCTGCA 
    CTCGCTCATG ACCCTCACGG AGGTGCTCGC CGTGCTGCTC AAGCACGGGA 
    AGGTGACCGA GGAGAAGGCG AGGGAGGTAA GGCAGTTTCT TGACGCCAAT 
    AGGAAGGTGA CCGTTCCCGG AGCGGCGGGC GCCGTTAAGC CCAAAGCGGT 
    CAGGAAGGGG TTTGCTGAGA GGGCTGGATT GGCCAAGAAC CCGATGGGGA 
    AGAGGCTTTT CGAGGTGATG GAGGCAAAGC AGAGCAATTT ATGTGTTGCT 
    GCCGATGTGG GAACTGCAAA GGAGCTCCTT GAGCTTGCAG AGAAGGTTGG 
    TCCAGAGATT TGCATGCTGA AAACTCATGT GGATACCTTG TCTGACTTTA 
    CTCCAGATTT TGGAGCTAAG CTTTGCTCGA TTGCCGAGAA GCACAACTTT 
    TTGATATTTG AAGACCGCAA GTTTGCTGAC ATTGGAAACA CAGTGACTAT 
    GCAATATGAA GGAGGAATAT TTCGCATATT AGACTGGGCT GATATCGTCA 
    ATGCCCATAT AATTCCTGGA CCTGGAATTG TGGATGGTCT GAAGCTTAAG 
    GGTTTGCCAA AAGGAAGAGG GCTGCTTTTG CTTGCTGAAA TGAGCTCGGC 
    TGGCAACCTT GCTCATGGAG AGTACACTGC TGCAGCTGTA AAGATTGCTG 
    AGCAACATTC TGATTTTGTA ATTGGATTTA TATCCGTTAA TCCAGCATCT 
    TGGTCAGTTG CGCCATCAAG TCCAGCATTT ATCCATGCCA CTCCTGGAGT 
    GCAGATGGTT TCTGGAGGAG ATGCTCTTGG TCAACAGTAC AATACCCCTC 
    ATTCTGTTAT AAACGACAGA GGCAGTGACA TAATTATAGT CGGACGAGGG 
    ATTATAAAGG CGAGTAATCC AGCCGAGACC GCGAGGGAGT ACCGCATCCA 
    AGGGTGGGGA GCATACCAAT CCAGCTTGCC ATGAGAAATT GAGAATGTGT 
    TTAGGCCATG TTTGTTTCAG CTTATGATTA TTATAATCTA GATTATTAAG 
    CCAGATTGCT ATAAGCTGGA TTATAATAAG CTGACATAGA ATAAGCTGTG 
    AGTTGTTTGT TTGTCTGGAT TATTGGAGGC ATGGATTATT GGGTTTGAAA 
    GGCTAAAGTC TATAATACCC TCAGCTATCT GTTCGGTTGA TGGCATAGTG 
    GTTAATTTTT CTCAAGCATG TAGGGGTAGT GGGTCTTTAG CCACTCAATA 
    ATCTGAAAAA AGCTCCTTTA GAGCAGCTTA TTAGATTATA ATAATCTGGC 
    TTATAGATTA TAATAATCTG CTACAATAAT CTACTTGTTT GTTTCAGTTT 
    ACTCCTAATA AGGTAGATTA TAATAATCCT AAACTGAATC AAACAGGCCC 
    TTAGTCCACA CCCTATGCCA AATAATGGGC ATTCACTCAT TCAGGCAGCT 
    ACTGTAATAA GAGCATGCTC TGCGTTCCAT CAGTATTGGC TCGCGCTGTT 
    TGCAACAATA ATTTAGAGTT CAAGATGATG AAGCC

    Gene models with high sequence identity

    1. AT3G54470.1 [+] show detail - uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
      E-value: 4e-166; Score: 582.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.6e-51
    Gene3D Aldolase-type TIM barrel 3.8e-99
    PatternScan Orotidine 5'-phosphate decarboxylase, active site 0
    HMMTigr Orotate phosphoribosyl transferase 2.4e-40
    HMMTigr Orotidine 5'-phosphate decarboxylase, subfamily 1, core 2.5e-78
    HMMPfam Orotidine 5'-phosphate decarboxylase, core 3e-79
    HMMPfam Phosphoribosyltransferase 3e-06
    superfamily Ribulose-phosphate binding barrel 4.4e-71
    superfamily PRTase-like 6.9e-42

    See the detailed result >

    AT3G54470.1

    Model type
    Protein coding
    Short Description
    uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
    Curator Summary
    encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis
    Computational Description
    uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); FUNCTIONS IN: orotate phosphoribosyltransferase activity, orotidine-5'-phosphate decarboxylase activity; INVOLVED IN: response to cadmium ion, cellular response to phosphate starvation, pyrimidine ribonucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Orotidine 5'-phosphate decarboxylase, subfamily 1, core (InterPro:IPR014732), Orotidine 5'-phosphate decarboxylase, active site (InterPro:IPR018089), Ribulose-phosphate binding barrel (InterPro:IPR011060), Phosphoribosyltransferase (InterPro:IPR000836), Orotate phosphoribosyl transferase (InterPro:IPR004467), Orotidine 5'-phosphate decarboxylase, core (InterPro:IPR001754); Has 9174 Blast hits to 9124 proteins in 2964 species: Archae - 386; Bacteria - 5538; Metazoa - 208; Fungi - 955; Plants - 89; Viruses - 3; Other Eukaryotes - 1995 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR