K20105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20105

Determination of introduced cDNA(s)

  • J023023O07 - Rice Full-length cDNAs - Original: J023023O07

    full reading [+] show sequence

    Nucleotide sequence: J023023O07 - full reading 
    GGGTACTAGT GTATTTCACG ATAAATACAA CGGCGGCCCA CCACCACCTC 
    GCTCCGTAGT GTCCGCACAG CGAACGCCTC TCGCGCGCGT GCTTACTGGT 
    GACTGGTCCA AGCAGCAACG CAAGCAATGG CGTCGCACGC GAACGCCTAC 
    GGCATCGCCT TCAGCGGTGG GTTTGGCACA TACTTGTTTG GTATGAGTGA 
    AACAATTGCT AAGCAAGCAA CAGAGGCTAA TAATGCTCAG AATGTCAAGA 
    ACCCTCACAT CGGGTGGATG ATTGGATTCC TCTTCCTCGT CAGTTTTATT 
    GGGCTACTTG CTCTTGTGCC TCTGAGAAAA ATTATGATTG TCGACTACAA 
    ACTGACCTAT CCAAGTGGCA CGGCAACAGC TTATCTTATC AATGGCTTCC 
    ACACCCCAGA GGGTGCAAAG CTTGCTAAGA AGCAAGTAAA GGAACTGGGG 
    AAACTCTTTT TGTTCAGCTT CGTTTGGGGC TTCTTTCAGT GGTTCTATAC 
    TGCCGGAGAT GGTTGTGGAT TCCAGAGCTT CCCTACATTA GGCCTTCAAG 
    CCTATAAAAA CAGGTTTTAC TTTGATTTCT CCCCTACCTA TGTTGGAGTA 
    GGGATGATTT GCCCCCACAT TGTGAACGTA TCTGTTCTAT TGGGAGGCAT 
    CCTCTCATGG GGAATCATGT GGCCCCTGAT AAGAAACAAG AAAGGGAGTT 
    GGTATGCTGC CTCTCTCTCA GAAACTAGTC TTCATGGACT GCAAGGCTAC 
    AGGGTGTTCA TATCCATTGC CTTGATTCTT GGAGACGGCC TGTACAACTT 
    CGTGAAGGTG CTCATCCGCA CAACCGCTGG CTTCGTCGTG ATGATGAAGA 
    AGAACAGCAC GCTTCCGGTC TCCAACAATG GCAGCCCGAT GGTGGCCACT 
    GAAGCCATCT CCTTCGACGA CGAGCGCCGC ACCGAGCTCT TCCTCAAGGA 
    CCAGATCCCC AAGACGGTCG CGTTCGGGGG GTACGTCGCC GTCGCCGCCG 
    TATCGATCGG CACGCTCCCG CAGATCTTCC CGCAGCTCAA GTGGTACTAC 
    ATCCTGGTCG CCTACGTCTT CGCGCCCGTG CTGGCCTTCT GCAACGCCTA 
    CGGCGCCGGG CTGACGGACT GGTCGCTCGC GTCCACGTAC GGCAAGCTCG 
    CCATCTTCAT CTTCGGCGCG TGGGCCGGCG CGTCGAACGG CGGCGTGCTG 
    GTCGGGCTCG CCGCCTGCGG GGTGATGATG AGCATCGTGT CGACGGCGTC 
    CGACCTGATG CAGGACTTCA AGACGGGGTA CCTGACGCTG GCGTCGCCGA 
    GGTCCATGTT CGTCAGCCAG GTGATCGGCA CGGCGATGGG GTGCGTCATC 
    GCGCCGTGCG TCTTCTGGCT CTTCTACAAG GCCTTCGCCG ACATCGGCGT 
    GAGCGGCACC GAGTACCCGG CGCCGTACGC CATCGTGTAC CGGAACATGG 
    CCATCCTCGG CGTCGACGGC TTCTCCTCGC TGCCCAAGCA CTGCCTCACG 
    CTGTGCTACA TCTTCTTCGC CGCGGCGATC GCCATCAACC TGGCAAGGGA 
    CCTGGCGCCA AGCAAGGTGG CGAGGTTCAT CCCGCTGCCC ATGGCGATGG 
    CGATCCCGTT CTACATCGGC TCCTACTTCG CCATCGACAT GTTCATCGGC 
    ACCGTCATCC TCTTCGTGTG GGAGATGGTG AACAAGGCCA AGGCGGAAGC 
    GTTCGCGCCG GCGGTCGCCT CCGGCTTGAT CTGCGGCGAC GGCATCTGGA 
    CATTGCCGCA GTCCATCCTT GCCCTCGCCA AGGTGAAGCC GCCGATCTGC 
    ATGAAGTTTC TGTCGCGATC GGTGAATGCG CAAGTGGATG GTTTCCTGGG 
    TAACTAGATG TGATCAGCCT GAAATCATCG CCAATGTGAA CAACCACTCT 
    GTATCATCTG TGTCATCATC CTGCAATCTC GGTTTCAAAA AAAAAAAATC 
    ATCCTGCAAT CAGGATATCG TATGTTCTGT TAGGGATTGT ACTATAATCT 
    GTCTCTGAAC ACCTGTATAT GTTAGTGGAG TGTGACAATC ATCCTTGAAT 
    CCTTGATTCC AAATTTCCAG TGTTGTAATT GTATATATAT TCCTGCAATC 
    ATCAGTAAGT GGCGTTCTAC TGTCTCC

    Gene models with high sequence identity

    1. AT1G65730.1 [+] show detail - YELLOW STRIPE like 7
      E-value: 0; Score: 806.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PROKAR_LIPOPROTEIN 6
    HMMTigr Oligopeptide transporter OPT superfamily 3.4e-56
    HMMPfam Oligopeptide transporter OPT superfamily 1.1e-119

    See the detailed result >

    AT1G65730.1

    Model type
    Protein coding
    Short Description
    YELLOW STRIPE like 7
    Curator Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL4
    Computational Description
    YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR