K20106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20106

Determination of introduced cDNA(s)

  • J023109J17 - Rice Full-length cDNAs - Original: J023109J17

    full reading [+] show sequence

    Nucleotide sequence: J023109J17 - full reading
    CACTGAGCCC GCATCGTCTC GTCTCCCTCT CCCTCTCCCA CCCCGCCTCC 
    CTCCTCGACG AGCTCCGAGC GGCGGCGATG GCGAGCGACG GCGCGGCGGC
    CACGCCGGCG AAGGCGAGCC CGAAGAAGGC CAACCTCCTC GACCCCCACT
    CCATCAAGCA CCTCCTCGAC GAGACCATCT CCGACGTCGT GAAGAGCAAG
    GGCTACGCGG AGGACACGCG GCTGGGCAAC TGGAAGCTGG CGATTGGGGC
    GGCCGTGATC GCCATCGCTC TCCTCGCGCA GTTCTACCCG AAGAAGTTCC
    CCCAGAACCG CGAGTTCCTC CTCGGCTGCA TCGCATTATA TGTGGTGTTG
    AATGTGGTGC TGTTGATACT TAGCTATACC AAGGAAAAGG ATGCCATTAT
    GTTCACACAC CCTCCTGCGG GTTCTTTCAA TAGCACTGGA CTAGTTATAT
    CTTCAAAATT ACCAAGATTC TCGGATATGT ACACTATCAC AATAGCCAGT
    GCAGATCCCC AGTCTATTTC CGCCAATAAG CCAGTTCATT TCACTAAGAG
    TGTTACAAAA TGGTTTACTA AGGAAGGAGT TCTCGTGGAA GGCCTGTTCT
    GGAAGGATGT TGAGAGGTTG ATTGATGACT ACAACACTGA GCGCAAGGGC
    AAATGAATGG GTAGTCCATG TGACTATGAG ACGTTAATTG TCTAGAAAAG
    AAACCCTCTT GTGGAATTCC TTGCTTGGAA GAATCCTTAG CTTAATCAAA
    ATAGACAATT TTGTCATACA TTACTGTTTC ACTGGTGATT GAAATACTGT
    CGAAGACACC CGGTACCATC CC

    Gene models with high sequence identity

    1. AT2G39960.1 [+] show detail - Microsomal signal peptidase 25 kDa subunit (SPC25)
      E-value: 1e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Microsomal signal peptidase 25kDa subunit 4.4e-46
    HMMPanther MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT 8.3e-47

    See the detailed result >

    AT2G39960.1

    Model type
    Protein coding
    Short Description
    Microsomal signal peptidase 25 kDa subunit (SPC25)
    Computational Description
    Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT4G04200.1); Has 283 Blast hits to 281 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 36; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR