K20107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20107

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20107

Determination of introduced cDNA(s)

  • J033082A10 - Rice Full-length cDNAs - Original: J033082A10

    full reading [+] show sequence

    Nucleotide sequence: J033082A10 - full reading 
    GAGAATTTGA TGCCAAGCTA TAGCTAGAGA CGACGCGGAG ACGGTGTGAG 
    AGAAACGAGA CGATGCTGCT GAGGAGCTCG TCGACGCCGT TCCTGCACTC 
    CTTCCTCTCG CCGTCGTCGG CGGCGGCTGC GCCGTCCTCT CTCCAGCTGC 
    GGCGAGCCTT TCTCCGACGG CCACCTGCCT TCCCTCCACC CGTCCTCCGA 
    CGGTGGTGGT GGTAGCAAGA ACAATACCAC CGGCCTCCAC ACGGAGCTCT 
    CCTTCTCCAT CTACAACACC TTCAACAAGA TGGCGCCGCC GCCGCCGCCG 
    GTGCAGGAGC AGGAGGAGGC TGAGCAGCAG CAGGCCCCCG GGGAGCCGAA 
    GCTGCCGCTG TTCTTGGCGA GAGGCCTCGG GATCGACCGC ATCGCTTCCG 
    GCCTGTTCAC CGCCGGCGGC GGCGGCGACG GCGACGGCGG CAACGGTGGC 
    GCTGGGAGGA TGAGCGCCGT GGAGGAGGAG CACGCCGAGA AGGTGGCGGC 
    GCTCGACGCG CAGTACAAGA GGATGATGGA CGAGCAGCCG GGCGACGCGC 
    TGTTCCTGCG CAACTACGCG CAGTTCCTGC ACGAGGTGAA GGGCGACGCG 
    AGGAGGGCGG AGGAGTACTA CTCGCGCGCC ATGCTGGCGG ATCCCAGCGA 
    CGGCGAGATC ATGTCGCAGT ACGCCAAGCT GGTGTGGGAG GTGCACCGCG 
    ATCTGGACAG ATCCCTCACC TACTTCCACA AGTCCGTGCA GGCCGCGCCG 
    CACAACAGCA ATGTCCTCGC CGCGTACGCC AGCTTCCTGT GGGAACAGGA 
    CGACGACGAC AACGACGACC TCGGAGAAGG CGAGCAGGAC GTGGCCGTGG 
    CGGCGCAGCC GGGGCATGTG AGGCAGCTGG CTTCCGTGGC CGTTTGATCC 
    GTGCGAGACG GGCTGACAAC GTGCTAAATG CGCTGTGCTT TCTACTACTA 
    AATGCGCTGG TGCTTACAAA CCGAAGAATA AATAATACCG CGGTTGGAAG 
    TTGGATGTAA CTATATCATG AAGTTCTCTT TTTCCTTTCA CGAATC

    Gene models with high sequence identity

    1. AT5G20190.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 6e-24; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther O-GLCNAC TRANSFERASE, P110 SUBUNIT-RELATED 0.000036
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 0.000036
    ProfileScan Tetratricopeptide repeat-containing 10.103
    superfamily TPR-like 0.000000047
    Gene3D Tetratricopeptide-like helical 0.00044

    See the detailed result >

    AT5G20190.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR